LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0919	ATGCTGCCGAGGCAATATGCAAAATCCAAGTGTCATGTAGAACAAGGGGATTTGTCATTTTCTTCCCCTCAATTCAAGAAACTAAGTCATCTCATGGAAAGTAAAGGACCGGTGAAGCCTCAGCCCAAAAAGAATTTATGGAAGCCTGAGGAAGACATGGTTCTGAAAAACTACATCGAAGCTCACGGTGAAGGACACTGGGAAGCTGTGTCCAAAAATTCGGGGCTGGAGAGAGGAGGGAAGAGTTGCAGGCTACGATGGAAGAACTATTTGAGACCTGACGTTAAACGTGGAGGTATGTCTGAAGAGGAAGAAGACCTTATCATCAGACTGCATAAGCTTCTTGGCAACCGATGGTCACTGATAGCTGGAAGGCTTCCTGGGAGAACTGATAATGAAGTGAAAAACTACTGGAATACCCATTTGAACAAGAGATGCCCTCGAGGCAAAAGGAAAGCCATTGATTCAAATGATGATCCCCAAGAAAGTAACAAGACATTACGATCCAGTAAGTCTGACTTTCCGAGTTCCACAAGCATTGCAGAGACAGGGTTAGAGGATGCAAGGAAAGAAGAGAGCAGTAACATCACCAATTCTTGGAGCTTTGACTGTGATCTAGATTTTCCAATTGTGCCCGGGAATAGTGCAGTATATGGTTTTGAAGACGAGTCTTTCATGACCAACTTGGATCCTGTCCTCTTGTTTGAAACTGAAGAAGCATTAGACTGGGGATGGTTTGAGTCCAATTCGCACATGCCATGGATCATGCCATAG	774	0.4444	MLPRQYAKSKCHVEQGDLSFSSPQFKKLSHLMESKGPVKPQPKKNLWKPEEDMVLKNYIEAHGEGHWEAVSKNSGLERGGKSCRLRWKNYLRPDVKRGGMSEEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKRCPRGKRKAIDSNDDPQESNKTLRSSKSDFPSSTSIAETGLEDARKEESSNITNSWSFDCDLDFPIVPGNSAVYGFEDESFMTNLDPVLLFETEEALDWGWFESNSHMPWIMP	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0919	257	ProSiteProfiles	Myb-like domain profile.	39	91	IPR001005	-
	Glsi13g0919	257	CDD	SANT	100	142	IPR001005	-
	Glsi13g0919	257	FunFam	Transcription factor TT2	100	171	-	-
	Glsi13g0919	257	FunFam	MYB-related transcription factor	43	96	-	-
	Glsi13g0919	257	Pfam	Myb-like DNA-binding domain	45	91	IPR001005	-
	Glsi13g0919	257	Pfam	Myb-like DNA-binding domain	97	142	IPR001005	-
	Glsi13g0919	257	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	41	186	-	-
	Glsi13g0919	257	SUPERFAMILY	Homeodomain-like	43	138	IPR009057	-
	Glsi13g0919	257	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	39	91	IPR017930	-
	Glsi13g0919	257	MobiDBLite	consensus disorder prediction	149	166	-	-
	Glsi13g0919	257	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	92	146	IPR017930	-
	Glsi13g0919	257	MobiDBLite	consensus disorder prediction	148	192	-	-
	Glsi13g0919	257	SMART	sant	96	144	IPR001005	-
	Glsi13g0919	257	SMART	sant	43	93	IPR001005	-
	Glsi13g0919	257	MobiDBLite	consensus disorder prediction	167	183	-	-
	Glsi13g0919	257	CDD	SANT	47	91	IPR001005	-
	Glsi13g0919	257	Gene3D	-	46	96	-	-
	Glsi13g0919	257	Gene3D	-	100	173	-	-
	Glsi13g0919	257	ProSiteProfiles	Myb-like domain profile.	92	142	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0919	Glsi-ChrGlsi13	27498191	27501063	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0919	43	233	MYB Transcription Factor Family	AT5G52600	51.675	9.26e-60	186

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi13g0919		Myb_DNA-binding	1.4e-10	CL0123