Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0917 ATGGAGAAGAAGTGTGGGTGCTGGGCTGTTCTGAAACGCGGCGTTAGAGGTGCGTGCAAACCCTCAGCTTCCAGAGACTCTGCTAACACTATTCCTCGTACTAGTCTGGTTTATGATGCAGCAACTGAGACACGATACCTGAATGCTAGTAATCGAGAGCTATGTCCTCCCAATGAAGCTCAACTATCTTGTGATAATCCTGATCCCCCATGTGAGGAAAATAAGGCTCCTTGCCACCTTCTTCAATTTTCTTTTCAGGAACTAAAAGCTGCGACTGGAAATTTCAGACCAGATAGCATTCTTGGCGAGGGTGGTTTTGGATTTGTTTTCAAAGGATGGATTGAAGAAAATGGGACAGCCCCAGCAAAACCAGGGTCAGGGGTTACGGTGGCTGTCAAAAATTTGAAACCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGACTTCCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTCGTTTATGAGTTCATGACCCGTGGAAGTCTAGAGAATCATCTATTCAGAAGAACCGTACCTCTTCCATGGTCGAACAGGGTTAAGATAGCACTTGGTGCAGCAAAAGGATTGGCCTTTCTCCATAATGGTCCAGAGCCAGTCATTTATAGAGATTTTAAAACATCAAACATTTTGCTTGATTCGGAATATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAGACACATGTTTCTACCAGAGTTGTTGGCACTTATGGTTATGCTGCTCCTGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATTTTAACAGGAAGAAGATCAATGGACAAAAAGCGCCCAAGTGGTGAACAAAATCTTGTAGCATGGGCTCGGCCATATTTAGCTGACAAGCGAAAACTATACCAACTTGCGGATCCTCGCTTGGAACTAAACTATTCTCTTAAAGGGGTGCAGAAAATTTCTCAGTTAGCTTATAATTGCCTCAGTAGGGACCCTAAAAGCCGTCCTAACATGGATGAAGTTGTGAAGGCTCTGACTCCGTTGCAAGATCTTAACGACCTTGCCATCCTATCTTACCACTCTCGTTTGTCTCAACAAGGGAGGCGAAAGAAGAAAGCAGATGGAACTCCACAGCTTGCCTACTCACAATCCAAGAATATCAGGGGTTCTCCCTTGAACACTTCTAGTGGCAAGCAGCATCGACGTGATGGGAAGTGA 1305 0.4444 MEKKCGCWAVLKRGVRGACKPSASRDSANTIPRTSLVYDAATETRYLNASNRELCPPNEAQLSCDNPDPPCEENKAPCHLLQFSFQELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGVTVAVKNLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVAWARPYLADKRKLYQLADPRLELNYSLKGVQKISQLAYNCLSRDPKSRPNMDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKADGTPQLAYSQSKNIRGSPLNTSSGKQHRRDGK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0917 434 MobiDBLite consensus disorder prediction 394 434 - -
Glsi13g0917 434 CDD STKc_IRAK 101 377 - -
Glsi13g0917 434 ProSiteProfiles Protein kinase domain profile. 95 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0917 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Glsi13g0917 434 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
Glsi13g0917 434 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Glsi13g0917 434 PANTHER OS01G0588500 PROTEIN-RELATED 77 378 - -
Glsi13g0917 434 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Glsi13g0917 434 SUPERFAMILY Protein kinase-like (PK-like) 77 380 IPR011009 -
Glsi13g0917 434 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Glsi13g0917 434 FunFam Serine/threonine-protein kinase BIK1 65 180 - -
Glsi13g0917 434 MobiDBLite consensus disorder prediction 406 426 - -
Glsi13g0917 434 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0917 Glsi-ChrGlsi13 27462278 27465475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0917 83 374 Glycoside Hydrolase AT3G07070 56.419 4.25e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi13g0917 PK_Tyr_Ser-Thr 1.6e-48 CL0016