LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0901	ATGGCTATCACTGCACTATTATTGATGCTATTACTGCAATTGCCAAGAAATTTTACCTCTGGAGTTTTCTTAGAGTCAAAAGATTGTGGTGCTAATTGGGTAGCCTACTCATACTCTCATGGTCAGAAACTTTATTACCTAAACGAGAATGTTGTAAACAAAGTTACTTTCTGTAAGACCCTCCAACTGCATATTGCAAATGGCTGCGATGTGAAGGACTACTTTGTTAGTAGCAACTGTGCATGGGATGCTTCTATAGTTAATTTACCTTCAAAGGTAGGAAGAAAACTTTTGCAGAAGGATTTCAGCAATAAATCCAAATCCCAAGCCCACACAAATGTTTCCAAGCCTCTGTCAACCCCCCAAGTTGGAATAGCTGCAAGTGGAGTTTTGTTAGTTTGTTGTGCTGTTCTCTGTCCTTGTATTTATGGGAAGAGACGAAAACCCACTGCTCATGCCGTTCTGACCAGGGACCCGAATTCAACGGAGTCAGCTTCCCCCTTTGAAGTGAACTATGTTTCTGAGAAGACCCCTGCAAGTCCACTTCCGGTGCCACCAAGTCCTTCAAGATTCTCAATGTCCCCAAAACCCAGTAGAATTGGGTCGTTAGATCTTAGCTTGAGTCAAATTGCAAGGGCTACCCATAATTTCTCAGATACTTTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCAGCTAGAAGAGGGCCTGGTTGTGGCCGTAAAACGTGCAAAAAGGGAAAATTTTGAGAGTTTGAGAACTGAATTCAGTAGTGAAATCGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTAATAGGTTATATTGACAAAGGAAATGAACGCCTTCTTATTACAGAGTATGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGTCTACATGGAAAAATCCTAGATTTCAATCAGCGCCTTGAAATTGCCATTGATGTTGCTCATGGCTTGACCTATCTGCATCTTTATGCAGAAAAGCAAATTATCCATCGAGATGTGAAATCTTCCAACATACTTCTAACAGAAAACATGAGAGCCAAAGTTGCTGATTTTGGCTTTGCAAAGATTGGTCCAATGAACTCTGATCAAACACATATTTCGACCAAAGTGAAGGGAACAGTTGGTTACCTGGACCCTGAGTACATGAAAACATACAAACTCACTCCCAAGAGTGATGTTTACTCATTTGGAATCTTGCTTTTAGAAATTTTGACAGGCCGCCGTCCAGTGGAGTTGAAGAAACCAGTTGAAGAGAGGGTTACACTACGATGGGCTTTCAGGAAGTACGATGAAGTGAGTGTGGTGGAACTGCTGGATCCTTTAATGAAGGAAGGTGTAAATGCAGAGGTTCTCAAGAATATTCTTGATTTGGCATTTCAGTGTGCAGCACCCATTCGAGCAGATCGACCTGACATGAAATCAGTGGTACAGCAATTGTGGACAATAAGAGTAGATTACCTCAAGCGTACAAAGAGAGGATAG	1512	0.4167	MAITALLLMLLLQLPRNFTSGVFLESKDCGANWVAYSYSHGQKLYYLNENVVNKVTFCKTLQLHIANGCDVKDYFVSSNCAWDASIVNLPSKVGRKLLQKDFSNKSKSQAHTNVSKPLSTPQVGIAASGVLLVCCAVLCPCIYGKRRKPTAHAVLTRDPNSTESASPFEVNYVSEKTPASPLPVPPSPSRFSMSPKPSRIGSLDLSLSQIARATHNFSDTLQIGEGGFGTVYKAQLEEGLVVAVKRAKRENFESLRTEFSSEIELLAKIDHRNLVKLIGYIDKGNERLLITEYVPNGTLREHLDGLHGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTENMRAKVADFGFAKIGPMNSDQTHISTKVKGTVGYLDPEYMKTYKLTPKSDVYSFGILLLEILTGRRPVELKKPVEERVTLRWAFRKYDEVSVVELLDPLMKEGVNAEVLKNILDLAFQCAAPIRADRPDMKSVVQQLWTIRVDYLKRTKRG	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0901	503	CDD	STKc_IRAK	223	489	-	-
	Glsi13g0901	503	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	189	293	-	-
	Glsi13g0901	503	Gene3D	Phosphorylase Kinase; domain 1	190	293	-	-
	Glsi13g0901	503	ProSiteProfiles	Protein kinase domain profile.	217	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0901	503	MobiDBLite	consensus disorder prediction	176	195	-	-
	Glsi13g0901	503	SMART	serkin_6	217	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0901	503	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	294	503	-	-
	Glsi13g0901	503	Gene3D	Transferase(Phosphotransferase) domain 1	294	501	-	-
	Glsi13g0901	503	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	93	492	-	-
	Glsi13g0901	503	Pfam	Protein tyrosine and serine/threonine kinase	222	489	IPR001245	GO:0004672\|GO:0006468
	Glsi13g0901	503	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	338	350	IPR008271	GO:0004672\|GO:0006468
	Glsi13g0901	503	ProSitePatterns	Protein kinases ATP-binding region signature.	223	245	IPR017441	GO:0005524
	Glsi13g0901	503	SUPERFAMILY	Protein kinase-like (PK-like)	198	494	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0901	Glsi-ChrGlsi13	27324046	27327516	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0901	123	489	Receptor kinase-like Gene Family	AT3G46290	39.730	2.17e-74	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Glsi13g0901		PK_Tyr_Ser-Thr	3.9e-52	CL0016