Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0866 ATGCTACTCCCAGGCTTCAGGTGCCGATTTGGCCCTCAGGTGAAAATCTCTCCTGCCCCTGATAGCGCCAAGCATCAGTGTGTTCAGTGGAGAATGGCAAGTAATAGTACTGAAAAGATCCCTATTAATAAGGGTACTGAAGGTTCTGAAACCACCATTGAGATAAAGATTAAAACATTGGATTCACAAACTTATACTCTCAAAGTGGATAAACAGATGCCAGTACCTGCTCTGAAAGAACGGATTGCTTCTGTAACTGGAGTGTTATCAGAGCGGCAGCGCTTAATTTGTCGAGGAAAAGTTCTAAAGGATGATCAACTCCTATCTGCCTACCATGTTGAAGATGGTCATACCTTGCATATGGTTGTCAGGCAACCTGATCTACCATCAATGGGGAGTTCGCCCAATCATTCAGCAACTGACCCACATTCAAGCAATAGCAATGGTCACGTCAATCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTTAATGTTCCTGTTCAGGGAGATGGGGTTCCTCCGGAAATTAATAGGATTATTTCGGCTGTTCTAGGATCTATTGGAATTTCAAATTTTTCAAGTGGCAGTGAAGGGATTGAAGTCAGGGGGCATGATTCCCAAGGGTTTGGAAGAACTTCAGGTTCTAGTGGCATATCAGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGCGGAATTCCTCTGATAGATCGCATAATACCTTTGGACTTCCAACAGCTGTTTCTTCTTTGGGGTCTTTACAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTACCTGAGTCATATAAAGCATGAATTTGAAGCCATTGTCAGAGAAGGGGGAAATAATGTCCAAGCAGCTGATGTTCATAGGAATGAAGAAGGATCCATTTCTTCCTCACCTTCAGTTTCTATTCCAGAAGGGCTTTTGTCACCTGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGTTCACTGAACAAGCTGGCGAGTGTTTATTTCAACTTGCAAGACAACTGGAGAATCAAGCAAATGTGACTGATCCCCTGTTGCGGTCAAGCATTCAATCAACGGCTTGGAGGACTGGAGTTCTGTTTTACAATCTTGGTGCTTTTTTGCTTGAGCTTGGTCGTACAACCATGGCATTGCGTTTGGGTCAAACTCCGTCTGAAGCTGTAGCTAATGGCGGGCCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCATTTCAACCGGGAGCAAGCTTCGGTGCTGCCCCTGTTGGAGCTGTGCAGTCCAGCTCTGGTTTAGGTAGTGGACTTGGCTCGAGCTTTTACCCAAGGCGTATTGATATACAGATACGGCGAGGTACATCAACAACCTCAGCCAATGTCATCCAAGAAGAAAATGGTAATACACTGTTTACCTCGGTACCTAGAAATCCAGGTGAAATTTCTGTTAATCAAACAAGCTCAAGACTTCCAGAGGATTTATCTTTTGCTGGGGAGTCAGGAGTACGGATAGTGCCAATTAGAACCATGGTTGCCGCGGTACCTGGTCCCTTAGGTCGCACAACTTCAGAATCTTCTGGTAATTCTATAGGTCTTTACTATCCAGTTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGGGAATAGTGAAACGGGATCTCAACCACCTAGTCATGCTTCTGATCCTCATGCTGCACAACAGTCAATTCCTGAATCTACAGGGCAAAGGCAAAGCATGGATGATCCTGCAAGAAATGGATCCTTGTCAGATCCTGGCTTAAGACAAGAGCCATCTAACACTCGCAGGGTGAATATCAATGTTCTGACAGCTAGTGGGCCCCAAAACAACCAAGAGTCTGAGAGGCAGATACCCAATAATGTACTTCAGTTTATAAGGACACTCTTTCCTGGTGGTGAAATTCATGTTGAAGATTCCAGTTTACAGGGAACAACTGCTGGTTCTACTTCAAATCATGCTGGACCATCAATGGGTGCTACCAATGCCCCTCAAGCAGAACCCAGGGCTAGTGAGGAAGGAATATTTTTGTCTAATATACTCCGCGAGGTCATGCCCCTGATAGATCAACAAGCTGGGTCTGGGACACATGTAGCCCCTGAAGGCGAAAATGCTTCAGATGATCAAATGGCTTCTGATTCTTCCACCCAGGTTGGGACGTCACGCAGACCAAGTGATTCTGAGTCAATCCCTCCTAATTCCAAGCGTCAAAAGATGGAGTGA 2268 0.4497 MLLPGFRCRFGPQVKISPAPDSAKHQCVQWRMASNSTEKIPINKGTEGSETTIEIKIKTLDSQTYTLKVDKQMPVPALKERIASVTGVLSERQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPDLPSMGSSPNHSATDPHSSNSNGHVNQVAPGVFIETFNVPVQGDGVPPEINRIISAVLGSIGISNFSSGSEGIEVRGHDSQGFGRTSGSSGISDSFHPQPEQAGLRNSSDRSHNTFGLPTAVSSLGSLQPPVIPDSLTTLSQYLSHIKHEFEAIVREGGNNVQAADVHRNEEGSISSSPSVSIPEGLLSPASLAEVLLSTRRMFTEQAGECLFQLARQLENQANVTDPLLRSSIQSTAWRTGVLFYNLGAFLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPLPFQPGASFGAAPVGAVQSSSGLGSGLGSSFYPRRIDIQIRRGTSTTSANVIQEENGNTLFTSVPRNPGEISVNQTSSRLPEDLSFAGESGVRIVPIRTMVAAVPGPLGRTTSESSGNSIGLYYPVLGRFQHVSSGHGNSETGSQPPSHASDPHAAQQSIPESTGQRQSMDDPARNGSLSDPGLRQEPSNTRRVNINVLTASGPQNNQESERQIPNNVLQFIRTLFPGGEIHVEDSSLQGTTAGSTSNHAGPSMGATNAPQAEPRASEEGIFLSNILREVMPLIDQQAGSGTHVAPEGENASDDQMASDSSTQVGTSRRPSDSESIPPNSKRQKME 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0866 755 FunFam Large proline-rich protein BAG6 45 138 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 198 244 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 129 152 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 657 674 - -
Glsi13g0866 755 PRINTS Ubiquitin signature 63 83 IPR019956 -
Glsi13g0866 755 PRINTS Ubiquitin signature 84 104 IPR019956 -
Glsi13g0866 755 PRINTS Ubiquitin signature 105 126 IPR019956 -
Glsi13g0866 755 ProSiteProfiles Ubiquitin domain profile. 53 128 IPR000626 GO:0005515
Glsi13g0866 755 MobiDBLite consensus disorder prediction 125 152 - -
Glsi13g0866 755 Pfam Ubiquitin family 55 125 IPR000626 GO:0005515
Glsi13g0866 755 MobiDBLite consensus disorder prediction 657 685 - -
Glsi13g0866 755 SMART ubq_7 53 124 IPR000626 GO:0005515
Glsi13g0866 755 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 41 755 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 707 755 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 552 594 - -
Glsi13g0866 755 Gene3D - 46 149 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 208 244 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 552 612 - -
Glsi13g0866 755 MobiDBLite consensus disorder prediction 722 747 - -
Glsi13g0866 755 SUPERFAMILY Ubiquitin-like 44 142 IPR029071 -
Glsi13g0866 755 CDD Ubl_ubiquitin_like 55 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0866 Glsi-ChrGlsi13 27087737 27100036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0866 53 156 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 29.268 1.94e-09 54.7