Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0863 ATGTGTGTGCAGGACGCCGAGCAAGTTGTCCAAGATAAGGAAAACCTGGAGAATAGAAGAAAGTCCTGGCCTTTGCATTGTGAGCTCTTGCCTACCCAGATGGAGAACTGGGAAGAAGATTCTTCTTTTAGAACTTCCAGCGATCGGATTAGTGCTGGGAATTCAATTCCTCTGGAAAGCATATGTGAGGACACGGTGATTGCAGACCAAAAACACAACCTGATGAACTTTGTCCCTTCTCTGCGGTCTGGAGAATGGTCTGATATTGGAAGTCGCTCTTATATGGAAGATACCCATATATGCATTGGAGACCTAGGAAAGAAGTTTGGTTATGACGTAGTCAGTGAGGAAGCTGTATCTTTTTATGGGGTATTTGATGGACATGGAGGTAAGAATGCTGCAACATTTGTCCGTGATCATCTGCCAAGAGTGATAATTGAGGATGCTGACTTTCCTTTGGAGCTAGAGAAGGTTGTCACAAGGTCATTTTTGAAGACGGATGCTGCATTTGCAAAGACATGCTCTCTCGAATCGTCCCTGTCTTCTGGTACTACTGCATTAACTGCAATTATATTTGGGAGGTCTTTACTTGTGGCCAATGCCGGAGACTGCAGGGCTGTTTTGTCAAGACGTGGAGGGGCAATAGAAATGTCCAAAGATCATAGGCCCTTCTGCATCAAAGAAAGGAAGCGGATTGAGTCTTTAGGTGGATTCATTGATGATGGTTATCTGAATGGCCAGTTAGGTGTCACTCGTGCACTAGGTGACTGGCATCTCGAAGGCATGAAGGAGATGAGTGAAAGAGGTGGACCATTGAGCGCTGAGCCTGAACTTAAGTTGATGACACTGACCAAAGAAGATGAGTTTTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCACAAGCCAAAATGCCGTAGATTTTGCCCGGAGGAGGCTTCAAGAGCATAATGATGTGAAACTGTGCTGCAAGGAAATAGTGGGGGAAGCCTTAAAGAGAGAATCAACAGACAACTTGACAGTGGTGATGGTATGTTTTCACTCAGATCCGCCACCACCTGTAGTGGTAGAAAGGGCGAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAAAATCTCAAATGCCTACTGGAGGGATAG 1143 0.4532 MCVQDAEQVVQDKENLENRRKSWPLHCELLPTQMENWEEDSSFRTSSDRISAGNSIPLESICEDTVIADQKHNLMNFVPSLRSGEWSDIGSRSYMEDTHICIGDLGKKFGYDVVSEEAVSFYGVFDGHGGKNAATFVRDHLPRVIIEDADFPLELEKVVTRSFLKTDAAFAKTCSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRRGGAIEMSKDHRPFCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKLCCKEIVGEALKRESTDNLTVVMVCFHSDPPPPVVVERARVRRSISAEGLQNLKCLLEG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0863 380 CDD PP2Cc 82 347 IPR001932 -
Glsi13g0863 380 FunFam Probable protein phosphatase 2C 22 65 350 - -
Glsi13g0863 380 SMART PP2C_4 72 345 IPR001932 -
Glsi13g0863 380 Pfam Protein phosphatase 2C 91 339 IPR001932 -
Glsi13g0863 380 SUPERFAMILY PP2C-like 71 348 IPR036457 -
Glsi13g0863 380 ProSiteProfiles PPM-type phosphatase domain profile. 82 347 IPR001932 -
Glsi13g0863 380 Gene3D - 66 350 IPR036457 -
Glsi13g0863 380 PANTHER PROTEIN PHOSPHATASE 2C 62 345 IPR015655 GO:0004722|GO:0006470
Glsi13g0863 380 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0863 Glsi-ChrGlsi13 27074627 27078980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0863 73 380 PP2C-type Phosphatase Gene Family AT2G25620 62.258 3.36e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Glsi13g0863 PP2C 1.6e-68 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0863 13 27074627 27078980 Glsi13g0863 13 27074627 27078980 ECH