Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0858 ATGGGTTCGACCAATAGTCGACTGGGGTCTCGCCCTTCTACCCCCCGAGTCAACGGCACCAACCGCTTCAGATTATCCTCTCTCCTATGTGGTGGCTCCTCCACCCGCGCTACTTATGAGATGGAAGATCATTCAACTGAACTTCAGGGAAATTCTGCCACAGACTTCGATAATAAAATTCAGAAAGTCATTGAGGAATCATCTTTATCACACTGTACCGAAGCTAGAATTAACTGCAGCCCCCGTGCTGAGACTACAACCTCATCTGATACCAGGATTGAGTTCAGTGAGATTGCTACTGTTGAAGGTTCTTCCACAAATGTTGCAACTAGTAATCAGAGGAAATGCTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTCATGATGAATCTTATAGGGATAGTAGCTACACAGCTAGTACTTCATTTGTAGGACAGCAGTCTTCAGATACAGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATAATATTGATAGTTCAGTGAACAGTGGTGTTTCTCAAATATCTCCTGAGACAATGTATCCAAGGAGCTCAACCTCTCAAGAGCATGGAGATTCTAGATCTGATGAAATTTCTATTGATAATCACGCTGGTACAGTTACAGCTCTACAGAATTCTGATTTGGATCACGTTGGTCAAGTTTCCAATTTACCAGTAACTTCTGAGTTGCCAGAAACTGAAACTCATCAAGAGGCAATACCTTCAGGTTTAGGCTTCCTTGTGTCCAATAGGGAAAGAGCACAGGGAAATGACAGTGTGTTTCATGTTGATGTCGTTGCAATATCTTCCAACATTTTATCTGGTGGCAATGCTGATGCGGGTGATCGTGATGCCAGAAGGGATAGTAGAAGACTATTTTGGGACGCTTTTTCAAGACGTAGTTCTAGAAGATTTGGTGATTCTCCAACCATTATCTTCTCAGCTGGTGATGCTGAAGACCCAAGATCTCAAGATCGATGGCTTCTTGATTTGAGTAGTGATTCCCCAAATGATCGAGTTGGAGGTGATTCTGGATACCTTGGCAGTAGAATTCACAGATTGAATGAACGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGACTTCATGGCGGCCTTGATGAGATTGGTCGGTTGAATTCTTCTTGTCCATTAGGAATCCACCCTGATGGCATGTGCTCATGTGAGTCTTTCCCGATGGCTGAAGAATCTAGCACTCAAGCAAGTATATCAAGAATAGCCATGCTTGCTGAAGCTCTATTTGAGGTTTTAGATGAAATCCATCGCCAACCTGTATCACTTTCCCTATCTATGGTCTCTCTCCCAGCGCCAGAATCAATTGTCGACTCTTTCCCTCTTAAGAGCCACAAAAAGGTTGGCACAACTGATGGTGGCAATGATGCTGAAGAACAATGCTACATATGCCTGGCGGAATATGAAGAAGGGGACAAAATACGAGTTCTTCCTTGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTAAAAGAAATACATGGTGTTTGTCCTCTCTGTCGTGGGAATGTTTGTGGAGAGTCCAACGACTCTTCTGCCTCTAACACAGAAGTACCGTCTCATTGA 1632 0.4357 MGSTNSRLGSRPSTPRVNGTNRFRLSSLLCGGSSTRATYEMEDHSTELQGNSATDFDNKIQKVIEESSLSHCTEARINCSPRAETTTSSDTRIEFSEIATVEGSSTNVATSNQRKCLSESKELVPPHQVSADHSHDESYRDSSYTASTSFVGQQSSDTVSVNVSANKDAVNNIDSSVNSGVSQISPETMYPRSSTSQEHGDSRSDEISIDNHAGTVTALQNSDLDHVGQVSNLPVTSELPETETHQEAIPSGLGFLVSNRERAQGNDSVFHVDVVAISSNILSGGNADAGDRDARRDSRRLFWDAFSRRSSRRFGDSPTIIFSAGDAEDPRSQDRWLLDLSSDSPNDRVGGDSGYLGSRIHRLNERMRHSRSEIWERLHGGLDEIGRLNSSCPLGIHPDGMCSCESFPMAEESSTQASISRIAMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVGTTDGGNDAEEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGESNDSSASNTEVPSH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0858 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 527 IPR013083 -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 172 197 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 126 140 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 172 207 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 103 118 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 103 155 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 141 155 - -
Glsi13g0858 543 Pfam Ring finger domain 480 523 IPR001841 -
Glsi13g0858 543 FunFam Putative RING zinc finger domain superfamily protein 447 528 - -
Glsi13g0858 543 MobiDBLite consensus disorder prediction 1 21 - -
Glsi13g0858 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
Glsi13g0858 543 ProSiteProfiles Zinc finger RING-type profile. 481 523 IPR001841 -
Glsi13g0858 543 SMART ring_2 481 522 IPR001841 -
Glsi13g0858 543 SUPERFAMILY RING/U-box 470 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0858 Glsi-ChrGlsi13 27056218 27060621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0858 389 527 C3H Transcription Factor Family AT5G45290 51.299 2.74e-40 151