Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0856 ATGGCTGGAATGCTTCCGGGGGTTGAATGTGCTCGAAGGAGACGGTTCCATCAGAGTGGAGGATGGTCTGATTCGCCAACCATGGCTGCTCATAGTTCCACAAGGCGCTCTTCTTTCTGTTTGTACACAAGCAACCATGAATCCTTTTCCTCGTCCTCTTCACTGTTGCAAAGAAGCCTATTATACCAGGCATACCCAGATGAGAAACTGGGAGGAGCAGCTAGAGAAGCCAAAGAGAGATTGGATGAGAGATTAAGAACACAAAGGAAATCAGAAAACAAAAGCAAAGAAAAGTTGAGAAGTGAAGCTGAGTTGCACATAGAGGTATATGGGGCAAAGAAGAGTGGAAGTAGGAGGTTCAGTTGGAGCAAATTGAGCTGGAAGGCCTCAGAGCAAGAGGATTGTGCCGTGTGCTTGGAGTCATTCAAGGTTGGAGAGACACTGATCCACCTCCCTTGTGCCCATAGGTTCCATTCAAGATGCTTGGAGCCATGGCTAGAAAATAATTCTCACTGCCCTTGTTGCAGAACGGCCATCACTTCCCACTAG 549 0.4754 MAGMLPGVECARRRRFHQSGGWSDSPTMAAHSSTRRSSFCLYTSNHESFSSSSSLLQRSLLYQAYPDEKLGGAAREAKERLDERLRTQRKSENKSKEKLRSEAELHIEVYGAKKSGSRRFSWSKLSWKASEQEDCAVCLESFKVGETLIHLPCAHRFHSRCLEPWLENNSHCPCCRTAITSH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0856 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 181 IPR013083 -
Glsi13g0856 182 FunFam Zinc finger family protein 109 181 - -
Glsi13g0856 182 CDD RING-H2_PA-TM-RING 134 176 - -
Glsi13g0856 182 SMART ring_2 135 175 IPR001841 -
Glsi13g0856 182 SUPERFAMILY RING/U-box 122 180 - -
Glsi13g0856 182 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Glsi13g0856 182 PANTHER SI:CH211-59O9.10 18 181 - -
Glsi13g0856 182 Pfam Ring finger domain 134 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0856 Glsi-ChrGlsi13 27049951 27050745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0856 1 86 C3H Transcription Factor Family AT2G15580 53.684 1.68e-24 90.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0856 13 27049951 27050745 Glsi13g0856 13 27049951 27050745 ECH