Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0854 ATGGCGTTTGATCAAAATTTCATTCCAAAAGACCTGCGGCCATTGAACGTAACTCGAATTATAGCTGAAGAGCCCTTCATCTTACCTGCAACTACAACTAGTCGAACCACTGAACGTTTTCCTCCTAATTCAGCTTGCGAGGTCGGCGACTCTGGGGAGTTGCCCCTGTTTTACCCTGCATCTGTCTCCGATTCTGGCCTTGTTGGCATAGGTTATACAAATGCGGCATCGGGTGCCCCCACCTGGTGCGTTCCTCCCGGTTTGCCGACTGGGCATCCGACTATGAACCCTGCTATTGGGTTTAATTACAGTCCTAATTTTGGAAACCGGATTGGGGTTGGCAATGCTGCTTATCTTTCAAGTAGTGTTATGGCAACTGGACCTTTTCATACTCCGAATTTGGGCAGCGGGGTAGGGGGCAATAACGTGGATAAGTCTGGCAATGATGCACCTAATGGGCTTGGTTGTAGTGGTAACAGAGTCACTGAAAATGCCAGTAATCAGGTAGGCCGTATTCCACCTACTGGGACTGCTAGTAGTCCCACTACTGACCAGCGGCCAGCTGGGAATCGGGCTAATAAGGCAAGTGACGAGGGTGGGAATGATTCTGGGCCGGGGAAAAATGTGAAGATTTTATGCAGTTTCAGTGGGAAGATTTTACCTAGACCTAGTGATGGAATGTTGAGATATGTTGGAGGGCAGACAAGAATTATTAGTTTTAAGAGGGACGTGAGCTTCAACGAACTGATGCAAAAGATGGTTGATACATATGGGCAACCTGTAATTATCAAGTATCAGCTTCCTGATGAGGATCTTGATGCATTGGTGTCAGTTTCGTGCCCCGATGATCTTGAAAATATGATGGATGAGTATGAGAAATTAATTGAGAGATCTTCAGATGGTTCAGCTAAATTGAGGGTTTTTCTGTTTTGTGCTTCAGAAATTGATCCTTCTGGAGTCGTACTGTTTGGAGATTTACAAGACAGTGGGCAGAAATATGTTGAAGCTGTGAATGGATTTTCAGATAGAATCAGTGGTGGAAGCACAAGGAAGCAGAGTATCAGAAGTGCAACTTCAATCCGCAATTCTGATTTCAGTGCGACAGAAGCTCTTGAAAGCTCAATTGCTGACCAAGGGGATACCAGTGGGGCACCCACGACTAGCATGTTATCAATTAGGGGGGATGTGGCAGCATCTCATGACACTGGTGAAAAATTAGTCATTGGAGAGCCAGATGCTTCTGCAGTTCCATTGAGCACACCCGTGGCTCCGATCCACTCTTCACCCTTCCAGAATGAGGTTGAGTTAGAAAGGTCTGTACCAATTACTCTATCCCACCAGCAATTTGGGTTGGAGCAATCTGGAATGGACATTCCTCCACCTGTACCTTATCTGCAGCGGCCCTTTGTTGATTCACGCCAGGAAGTTATGAACCATGCAGATTATGTCCAGCTGCCTCCCCAGATGCGGTTCTTAAATCCTCAATTTTTAGGGAATCCTGGTTCTATCTTCATTCAACAGCAGTTTCGTGATAATACTCCAGCTTTAGCATCCTATCAGGTTATCCCAGTGGTACAAATGACAATGACTCCCTCATCTTCTCATTTTGGTGTAGCACCTAATATTATGCAACCACTAATGCAACCCCACCAAAATCGTGTGGACCAATTTAATGATGAATGTAAATCAGGGATAAGGATTGTCCAGCTTCCTGCTGAAAATAGCTGCAACTCTGACCAGGTTCAAGTTCCTTCTGCAGTAGTTGGAGGTAATTATGGTTGGGTTCAGGTTCCTCCACAAGAGCATGCTATTTTTTCTGATGGGTTGTCACCTCAACAAAAAGTAATGATCCCTAAGAAAATACAAAGATTAGAGGACTGTTATAAGTGTCAGAACACCTTAGGTCATGCACATTCCGATCCTGTAATTCAGGATCAGTGTGATGGTGGTGCAGGTCCAATTTCTGATTCAATCCCAAGTTACCATAGTCTCCCTATGGAGGACAATCTAAAAGGTCAAGCAACAAATGCGGTTATGGTGACTGCTCCCTTGAAGGAAGGCGTCAACGAGCAAGTGATTGGGACCCGACCCAGGGTCATTAGCAAAGTGGAACCTCCGCTTGGAGTACCTTTTACTGATACAACCGGGCTCTCTCAAAATCTTGAGTCGCAGCCTGAAGGTGATAGGGATTTTATACAAAAGATAGACGGTTTGGGTCATCCTAGGAATTCAATTGTCCAGGACACCAATGGAAGGGCGGGTGATAAACAGTCACCAAGTGATGGGCTCTCTGGCACGACACCACTGTCTTGCCAAGATAAAGTTGTCCGCCGTTATTTGGTGCCAGTTGAAAACTTGGTTAACCAGGACGCGCTAGTTAGTAAACCTGTCAATAATGATATACCTCCTGTTGGTGCCACAGCCATACAAACTTCAGAGTGTGTTGTTCAAGAACCACCAAAAAAATATACCAATGAACTTGCTGGCTATGTTTCAAAAGCAGAGACTGTAGATAATTGGGTTACACAAGGCCCTCTGAGACCAATTGATGGGAGGATGGACAGCCTCAGGATACACAATGATGATATTTATGTAATTGATGATTGCTGTAAGCTGTCAGTTAATAAACCTAGTGGGAACAATGAATTTGATCACAATAATCAACATGTTATAGAGAAAGAAGTGCTTCTGGATAACAACTTTGGCAGATCAAAATTGGTCTTTGATGCAAATCCAAATAAGATGACAGATGTGCTGCCTTGTTCTTGTACGAAAATTTCGTGTGGGCATAATTCCAGGCTGGAGGAATGTAATGAGGTTGCGCAACCACTTGTTTGGGGCATTCCTGGATCAAATTCCCAATCAAGGAGTGGAAGCCATCACAAGGATGATGCCACGCCATCCTCAATATCTCCATCTGTCAGGTCTGGAGATGTGCTGAATTCTTCAAACGCACTTTTCAGCAGTCAGGATCCCTGGAATATACACCATGGTACCTACTTTCCAACTGGACGTAACAAAGATACATTGAAGAAAGAAACCTTTCCTTCTAAGGATCACTTTGGCGAGAACCTGCTGGGTAATTATGAGGAACAAAATTTAGAAGCTCACCTGGATGATGGATGCCACCAGCCATTCAAAAGGAAACTAACTTTAGAACATGGTTGGTTTGCTAAGGCGGAAGATCAGATCAAGCAAGAACTTCAAGCTGTTGCTGAAGGTGTAGCTGCTTCTGTTCTGCACTCAAGCACTCCTTCCAATCCTGACTTGCATGGCAGAGATGTGTACAGTCATGCGGACATTGAGGATGTAGATGTTCAAAATAATCTAGTAGATATACAGTGTAAAGCTAAAGTTCAGGATATTAAGAGCAAGCCACCAGAAAAGGCAAATTTTGGCTTTCCTATATCAGATGGCCTTGGAGGATTGCAGATTATAAAGAATTGTGACCTCGAAGAGCTGCGAGAATTAGGTTCTGGTACCTTTGGAACTGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGGATTAATGATAGGTGCTTTGCTGGAAAGTCTTCAGAGCAAGAGCGCATGAGAGGTGACTTTTGGAATGAGGCAATCAAGCTCGCCGATTTGCAGCATCCAAATGTGGTAGCTTTCTACGGTGTTGTGCTTGACGGACCGGGTGGTTCTGTGGCAACAGTAACAGAGTATATGGCTAATGGTTCTCTAAGAAATGCCTTGCAGAAGAATGAGAGAAATCTTGACCAGCGCAAGCGTCTTCTGATTGCAATGGATGTGGCCTTTGGTATGGAGTACTTGCATGGAAAAAATATTGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTCCGAGATCCACATCGCCCAATATGCAAGGTTGGTGATTTGGGTCTATCCCAAGTGAAACGTCAGACACTGATCTCTGGTGGTGTGAGGGGAACACTACCTTGGATGGCTCCAGAGTTACTGAATGGAAGCAGTAGCCTTGTTTCAGAGAAGGTCGATGTGTTTTCATTTGGTATTGTGATGTGGGAACTCCTCACTGGAGAAGAGCCATACGCTGATTTGCACTATGGGGCTATTATAGGTGGTATTGTGAGCAACACTTTGAGGCCCCCAGTTCCAGAATCTTGTGATCCAGAATGGAGATCGCTGACAGAGAGATGCTGGTCTTCAGAACCATCAGGGAGACCAAGTTTCACAGAGATTGCAAATGAATTACGCTCCATGGCAGCCAAAATTCCTCCCAAAGGACAAAATCAACAGCAGCAACCAGCTTCATTGCAATCCCAAGGGCAGAATTAA 4326 0.4464 MAFDQNFIPKDLRPLNVTRIIAEEPFILPATTTSRTTERFPPNSACEVGDSGELPLFYPASVSDSGLVGIGYTNAASGAPTWCVPPGLPTGHPTMNPAIGFNYSPNFGNRIGVGNAAYLSSSVMATGPFHTPNLGSGVGGNNVDKSGNDAPNGLGCSGNRVTENASNQVGRIPPTGTASSPTTDQRPAGNRANKASDEGGNDSGPGKNVKILCSFSGKILPRPSDGMLRYVGGQTRIISFKRDVSFNELMQKMVDTYGQPVIIKYQLPDEDLDALVSVSCPDDLENMMDEYEKLIERSSDGSAKLRVFLFCASEIDPSGVVLFGDLQDSGQKYVEAVNGFSDRISGGSTRKQSIRSATSIRNSDFSATEALESSIADQGDTSGAPTTSMLSIRGDVAASHDTGEKLVIGEPDASAVPLSTPVAPIHSSPFQNEVELERSVPITLSHQQFGLEQSGMDIPPPVPYLQRPFVDSRQEVMNHADYVQLPPQMRFLNPQFLGNPGSIFIQQQFRDNTPALASYQVIPVVQMTMTPSSSHFGVAPNIMQPLMQPHQNRVDQFNDECKSGIRIVQLPAENSCNSDQVQVPSAVVGGNYGWVQVPPQEHAIFSDGLSPQQKVMIPKKIQRLEDCYKCQNTLGHAHSDPVIQDQCDGGAGPISDSIPSYHSLPMEDNLKGQATNAVMVTAPLKEGVNEQVIGTRPRVISKVEPPLGVPFTDTTGLSQNLESQPEGDRDFIQKIDGLGHPRNSIVQDTNGRAGDKQSPSDGLSGTTPLSCQDKVVRRYLVPVENLVNQDALVSKPVNNDIPPVGATAIQTSECVVQEPPKKYTNELAGYVSKAETVDNWVTQGPLRPIDGRMDSLRIHNDDIYVIDDCCKLSVNKPSGNNEFDHNNQHVIEKEVLLDNNFGRSKLVFDANPNKMTDVLPCSCTKISCGHNSRLEECNEVAQPLVWGIPGSNSQSRSGSHHKDDATPSSISPSVRSGDVLNSSNALFSSQDPWNIHHGTYFPTGRNKDTLKKETFPSKDHFGENLLGNYEEQNLEAHLDDGCHQPFKRKLTLEHGWFAKAEDQIKQELQAVAEGVAASVLHSSTPSNPDLHGRDVYSHADIEDVDVQNNLVDIQCKAKVQDIKSKPPEKANFGFPISDGLGGLQIIKNCDLEELRELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKSSEQERMRGDFWNEAIKLADLQHPNVVAFYGVVLDGPGGSVATVTEYMANGSLRNALQKNERNLDQRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSQVKRQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPPVPESCDPEWRSLTERCWSSEPSGRPSFTEIANELRSMAAKIPPKGQNQQQQPASLQSQGQN 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0854 1441 SMART PB1_new 223 312 IPR000270 GO:0005515
Glsi13g0854 1441 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1239 1430 - -
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 136 190 - -
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 1396 1441 - -
Glsi13g0854 1441 Gene3D - 229 311 - -
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 704 769 - -
Glsi13g0854 1441 ProSiteProfiles Protein kinase domain profile. 1151 1418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0854 1441 SUPERFAMILY CAD & PB1 domains 224 315 - -
Glsi13g0854 1441 CDD STKc_MAP3K-like 1157 1414 - -
Glsi13g0854 1441 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1144 1238 - -
Glsi13g0854 1441 SUPERFAMILY Protein kinase-like (PK-like) 1146 1413 IPR011009 -
Glsi13g0854 1441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1276 1288 IPR008271 GO:0004672|GO:0006468
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 712 726 - -
Glsi13g0854 1441 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 228 312 - -
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 1422 1441 - -
Glsi13g0854 1441 CDD PB1_UP2 212 310 - -
Glsi13g0854 1441 Pfam Protein tyrosine and serine/threonine kinase 1152 1414 IPR001245 GO:0004672|GO:0006468
Glsi13g0854 1441 ProSitePatterns Protein kinases ATP-binding region signature. 1157 1188 IPR017441 GO:0005524
Glsi13g0854 1441 Pfam PB1 domain 228 310 IPR000270 GO:0005515
Glsi13g0854 1441 PANTHER SERINE-THREONINE PROTEIN KINASE 249 1416 - -
Glsi13g0854 1441 Gene3D Phosphorylase Kinase; domain 1 1144 1237 - -
Glsi13g0854 1441 SMART serkin_6 1151 1417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 948 976 - -
Glsi13g0854 1441 PRINTS Tyrosine kinase catalytic domain signature 1385 1407 IPR001245 GO:0004672|GO:0006468
Glsi13g0854 1441 PRINTS Tyrosine kinase catalytic domain signature 1233 1246 IPR001245 GO:0004672|GO:0006468
Glsi13g0854 1441 PRINTS Tyrosine kinase catalytic domain signature 1341 1363 IPR001245 GO:0004672|GO:0006468
Glsi13g0854 1441 PRINTS Tyrosine kinase catalytic domain signature 1270 1288 IPR001245 GO:0004672|GO:0006468
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 743 769 - -
Glsi13g0854 1441 Gene3D Transferase(Phosphotransferase) domain 1 1238 1441 - -
Glsi13g0854 1441 MobiDBLite consensus disorder prediction 136 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0854 Glsi-ChrGlsi13 27028833 27041105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0854 190 676 MAP Kinase Kinase Kinase AT3G46920 39.431 1.06e-88 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Glsi13g0854 PK_Tyr_Ser-Thr 1.5e-59 CL0016