Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0852 ATGGCTTTTCATGACCATCTTCCTCAAGAACTGGCTTTTCAGCCTTTCACGGATGAGCAACAGTTAGGTCAGAACAGGGACATGCAGAGACTGCTATCGCTCTCCGCCGCCACAGCAGCCGGAGGACCCTCGCCCACCTGGCTCAACAACGCTACTCTCCGGCAGCAGAATTTCCTCCCCTTGCAACCCGACTCCAACGCGACGCAAGCCGATGATGTCCGGCGGATAATACCCTCCGATAGAAGCATCGATCGAGGCGGCGATCGGAATCAGACCGACAGCAATTTTGAGTCCGAGGATTTGGCTGGGTACAAAGCTGACATTTTGGGACACCCCCTTTACGACCAGCTTTTATCGGCTCATGTTTCGTGTTTGAGGGTTGCCACGCCAGTCGACCAGCTTCCTAGGATCGACGCTCAGCTTCAACAGTCACAGGGCGTCCTGGAAAAGTACTCTGGGCTCGGAAATGGGGTGGTGGATGTGAAGGAGCTCGATCAGTTCATGACACACTACGTACTATTGCTCTGTGCCTTTAAAGAAAAATTGCAACAACATGTGCGAGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTTGAGCAGTCTCTACAGAGCTTGACTGGTGTATCTCCGGGAGAAGGGACAGGTGCAACAATGTCGGATGATGAAGACGACCAGGTAGAGAGCAATGCCCACTTATTTGAAGGAGGCCTAGATGGTGGTGATAGTCTGGGTTTTGGTCCTCTTGTTCCAACTGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGGCACGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGATAAGATAGTGGACATAAGAGAAGAGATTCTGCGAAAGAGGCGAGCAGGGAAGCTCCCCGGGGACACCACCTCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCAACGGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGGTTGCAGTTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACAAATAATCCTTCTACTTCTACTACCCCTAAAAGCAAGCGCAAGAGCAGTGCAGGTGAAACCAGTAACCAGAGCTTCATGTGA 1128 0.5018 MAFHDHLPQELAFQPFTDEQQLGQNRDMQRLLSLSAATAAGGPSPTWLNNATLRQQNFLPLQPDSNATQADDVRRIIPSDRSIDRGGDRNQTDSNFESEDLAGYKADILGHPLYDQLLSAHVSCLRVATPVDQLPRIDAQLQQSQGVLEKYSGLGNGVVDVKELDQFMTHYVLLLCAFKEKLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQVESNAHLFEGGLDGGDSLGFGPLVPTESERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSTSTTPKSKRKSSAGETSNQSFM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0852 375 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Glsi13g0852 375 SMART KNOX1_2 102 146 IPR005540 GO:0003677|GO:0005634
Glsi13g0852 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 361 - -
Glsi13g0852 375 FunFam homeobox protein knotted-1-like 3 isoform X1 287 348 - -
Glsi13g0852 375 MobiDBLite consensus disorder prediction 61 97 - -
Glsi13g0852 375 Pfam KNOX2 domain 160 208 IPR005541 GO:0003677|GO:0005634
Glsi13g0852 375 MobiDBLite consensus disorder prediction 74 95 - -
Glsi13g0852 375 Gene3D - 287 348 - -
Glsi13g0852 375 Pfam KNOX1 domain 104 145 IPR005540 GO:0003677|GO:0005634
Glsi13g0852 375 SMART KNOX2_2 153 209 IPR005541 GO:0003677|GO:0005634
Glsi13g0852 375 SMART HOX_1 288 353 IPR001356 GO:0003677
Glsi13g0852 375 Pfam ELK domain 266 287 IPR005539 GO:0003677
Glsi13g0852 375 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677
Glsi13g0852 375 MobiDBLite consensus disorder prediction 343 375 - -
Glsi13g0852 375 SMART ELK_2 266 287 IPR005539 GO:0003677
Glsi13g0852 375 SUPERFAMILY Homeodomain-like 288 351 IPR009057 -
Glsi13g0852 375 CDD homeodomain 289 350 IPR001356 GO:0003677
Glsi13g0852 375 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0852 Glsi-ChrGlsi13 27020105 27024487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0852 86 370 Homeobox Transcription Factor Family AT5G11060 79.038 1.03e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi13g0852 KNOX2 9.2e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0852 13 27020105 27024487 Glsi13g0852 13 27020105 27024487 ECH