Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0845 ATGCAACTTGCTTTATGGCTCTTATTTCTTGATGAGAAGTCTAGCTTAGGTCGGAGGATGGCCTCTTTCTGTGTGGTATTCCCTTATCTTCCTAGTTTGGTCCCACCGGAACCCAAAGTTTCCAACTTTTCAATGAAATCTTTAATCAAATTACATCACCTTCACGACGTGAAATTGTTCTCTGAGAAGAGGAGAATTCTGGACATGGCAGGTGGGTCTTTTGCAGCAGGTGGTGTGGCCAAGGAGAGGGCAAATCAGTATAAGGGTAGAGCTACAGCTTATGTGGTCATTGCCTGCGTTGTTGCTGCCATTGGCGGGTCTCTCTTTGGCTATGATATTGGAATTTCAGGTGGGGTTACTTCCATGGATGACTTTCTTAAGGATTTCTTCCCCACAGTATATAAAAACAAAATGCACGCACATGAAAGCAACTACTGCAAGTACAACAATCAAGGCCTTGCAGCATTTACTTCTTCTCTATACCTTGCTGGTTTAGTTGCATCTCTAATTGCATCTCCGGTTACAAGGAAGTATGGACGACGGGCAAGTATAATTGGCGGTGGTATCAGTTTTCTTGTTGGATCAGCCCTGAATGCCTCAGCTGTTAATCTTGCAATGCTTCTCTTGGGTCGAATCATGCTTGGTGTTGGCATTGGGTTTGGAAACCAGGCTATTCCACTTTATTTGTCAGAGATGGCACCAACCCACCTTCGAGGAGGTCTGAACATGTTGTTTCAGGTAGCAACCACTTTTGGGATTTTTACAGCGAATATGGTAAATTATGGAACACAAAATCTTAGACCATGGGGGTGGAGGCTCTCCTTGGGTCTTGCTGCAATACCGGCTCTTCTGATGACAATAGGTGGGATATTTCTTCCAGACACTCCAAATAGCTTAGTAGAACGAGGATCAAAGGAAAAAGGAAGAAAACTCCTTGAAAAAATCAGAGGAACAAGTCAGGTTGATGCAGAGTTCCAAGATATGATTGATGCAAGCCTGTTTGCAAACTCAGTGGAGCACCCTTTTCGTAACATCCTTGAAAGAAAGAACAGGCCAGAGTTGGTCATGGCGATTTTCATGCCTACATTCCAAATCCTCACAGGCATAAATTCAATTCTGTTCTATGCTCCTGTGCTGTTTCAGAGTATGGGGTTTGGTGGAGATGCATCTCTCTACTCATCTGCTTCGACTGGAGGAGTTCTTGCTTTCTCAACATTCATTTCCATTGCAACAGTTGATAGATTGGGTCGAAGAGCTTTACTTATCAGTGGCGGAATACAAATGATCACATGCCAGATAATTGTGGCCATAATCTTGGGGATCAAGTTTGGAGAGAACCAAGAACTGTCGAAAGGTTATTCAATACTGGTTGTAGTTGTGATTTGCCTATTTGTGGTAGCTTTTGGATGGTCATGGGGCCCACTTGGCTGGACAGTCCCGAGTGAGATATTTCCATTAGAGATCCGATCAGCAGGGCAGAGCATTACAGTTGCTGTGAACCTTCTGTTCACTTTCATAATAGCCCAAGCCTTTCTTTCCCTCCTCTGTTCTCTCAGGTTTGGAATCTTCCTGTTTTTTGCCGGGTGGATTACCGTCATGACCATCTTTGTTTTTGTGTTCCTTCCTGAAACCAAGGGAATTCCCATTGAAGAGATGAGGTTTATGTGGAGGAGACACTGGTTCTGGAAAAGGATAGTTCCTGGAGACCCAGAATTTGATACCAATGATGGTAAGGTTAACAGTTCCATGGAATCAGGCGACGCAGTTTGA 1770 0.4395 MQLALWLLFLDEKSSLGRRMASFCVVFPYLPSLVPPEPKVSNFSMKSLIKLHHLHDVKLFSEKRRILDMAGGSFAAGGVAKERANQYKGRATAYVVIACVVAAIGGSLFGYDIGISGGVTSMDDFLKDFFPTVYKNKMHAHESNYCKYNNQGLAAFTSSLYLAGLVASLIASPVTRKYGRRASIIGGGISFLVGSALNASAVNLAMLLLGRIMLGVGIGFGNQAIPLYLSEMAPTHLRGGLNMLFQVATTFGIFTANMVNYGTQNLRPWGWRLSLGLAAIPALLMTIGGIFLPDTPNSLVERGSKEKGRKLLEKIRGTSQVDAEFQDMIDASLFANSVEHPFRNILERKNRPELVMAIFMPTFQILTGINSILFYAPVLFQSMGFGGDASLYSSASTGGVLAFSTFISIATVDRLGRRALLISGGIQMITCQIIVAIILGIKFGENQELSKGYSILVVVVICLFVVAFGWSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLLFTFIIAQAFLSLLCSLRFGIFLFFAGWITVMTIFVFVFLPETKGIPIEEMRFMWRRHWFWKRIVPGDPEFDTNDGKVNSSMESGDAV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0845 589 PRINTS Sugar transporter signature 208 227 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 PRINTS Sugar transporter signature 481 493 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 PRINTS Sugar transporter signature 106 116 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 PRINTS Sugar transporter signature 364 374 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 PRINTS Sugar transporter signature 458 479 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 Gene3D MFS general substrate transporter like domains 88 559 IPR036259 -
Glsi13g0845 589 ProSitePatterns Sugar transport proteins signature 1. 408 425 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 Pfam Sugar (and other) transporter 99 556 IPR005828 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 ProSitePatterns Sugar transport proteins signature 2. 213 238 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 NCBIfam sugar porter family MFS transporter 87 552 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi13g0845 589 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 83 566 IPR045262 GO:0015144
Glsi13g0845 589 SUPERFAMILY MFS general substrate transporter 99 552 IPR036259 -
Glsi13g0845 589 ProSiteProfiles Major facilitator superfamily (MFS) profile. 98 545 IPR020846 GO:0022857
Glsi13g0845 589 FunFam Sugar transport protein 13 88 559 - -
Glsi13g0845 589 CDD MFS_STP 101 543 IPR044778 GO:0015145|GO:0015749
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0845 Glsi-ChrGlsi13 26964744 26970119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0845 69 580 Organic Solute Cotransporters AT4G02050 77.734 0.0 849