Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0842 ATGCACTTCCATCCAACACAACGCAACAAATATTCATATTTTAGACTGACACCATTTCCTTTGCTTGCTTGGGTCCTCACAATTGTCCCTCCTCTTTCTTGTGCTCTTCAAGTTCCAATGGAGATTTTTAAATGCTTTTACTTCAATCTTCTTGCCACTTTCATTTTCTTCTTCTTGGCAGTTTTAGCAATCGACCCTTATTCAGAGGCACTCCTGAGCCTAAAATCTGAACTTGTAGATGATGATAATAGTTTACATGACTGGGTGGTGTCCTCTGAAGGAAACTCAACTGGAAAATCCTATGCCTGTTCTTGGTCTGGAATCAAGTGCGATAAGGACTTAACAATTGTCACTGCCATAGACCTGTCCATGAAGAAACTGGGGGGTGTAATCTCAGGGAAGCAATTTAGTGTCTTCACAAAGCTTGCTGACCTCAACCTGAGCCACAATTTTTTTTCTGGGCAGCTTCCGGTGGAAATTTTTAACCTCACCAGTCTAACAAGCTTGGATATAAGCAGAAACAATTTTTCTGGTCTCTTACCAGGTGGGATTTCCAGCCTTCAAAACTTGGTTGTGCTTGATGCCTTTAGCAACAGCTTTTCAGGGCCGTTGCCTGCTGAACTTTCCCAACTTGAACATCTCAAGGTTCTTAATCTAGCCGGGAGTTACTTCAAAGGACCAATTCCATCTGCATATGGTTCTTTTAGAAGCCTCGAGTTTCTCCATCTTGCAGGAAATCTTCTCTCAGGAAATCTACCTCCAGAACTGGGTAGTCTCAAAACAGTAACCCACATGGAAATTGGCTACAACTTCTACCAGGGTTTTATTCCATTCCAATTTGGTAACATGACCGAGCTTAGGTACCTTGATATAGCTGGTGCAAATCTATCTGGCCCAATACCAAAGCAACTCTCCAATCTCACCAACTTGCAATCACTTTATCTGTTCAGAAATCAGCTCACTGGATCAATACCAAGTGAGTTTAGCAAGATCAAGCCTCTCACAAATTTAGATCTTTCTGACAACCTTATTTCTGGGTCCATTCCTGAAAGTTTTTCAGCGTTAGAGAACCTGAGACTGCTTAGTCTTATGTACAATGATATGAGTAGCACTGTTCCCGAAGGCATTGCACAACTTCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCCGGATCACTCCCGCAGAGCTTGGGCAGAAACTCGAATCTCATGTGGGTGGATGTTTCAACAAACAATTTTACTGGCAGCATACCACCAGACATTTGTATGAGAGGAGTACTATATAAGCTAATTCTGTTTTCAAACAGATTCACAGGTGGTCTTTCACCATCTCTCTCCAACTGTTCTTCCCTTGTTCGTCTTCGCCTAGAAGATAATTTCTTCACAGGGAAGATCCCTTTGAAATTCAGCCATCTTCCAGATATCTCGTATGTTGACCTCTCCAAGAACAAGTTTGTTGGTGGAATTCCTTCGGATATTTCCCAGGCTAGCAAACTTACGTATTTCAATGTCTCTAATAATCTGCTATTAGGAGGCATCATCCCTGCACAAACATGGTCTTTGTCATTGCTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTCAGGCAATCTTCCTCCATTTCTGTCCTGCAAATCAATCTCTGTCATTGAGCTGGATAGGAACAACTTATCTGGAATGATCCCAAGTACTGTTTCCAATTGCCGAACTCTTGAGAATATAAAACTATCCGACAATAATCTGTCAGGTCCTATACCCGAGGAGCTTGCAAGTATCCCCGTTCTTGGTGTGGTAGACCTATCAAATAATAACTTCAATGGCCCAATACCTGCGAAGTTTGGGACTTCTTCGAGTTTACGACTTCTTAACGTGTCTTTCAACTGCATCACTGGTTCAATTCCCACGGGAAAGTTATTCAAATTCATGGATAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGCACCTCTCCGACCATGTCCTGATTCAGTTGGAATATTGGGAAGCAAAGGCACGTGGAAGATTACAAGTATTGTGCTACTCTGTGCAGGGTTAATTATATTCCTTGCAGCATTAGCTTTTGGAATACTTTATTTCAAGCGAGGAGTTAAAAGTCAATGGAAGATGGTCTCCTTTGTCGGACTCCCTCAATTCACAGCAAATGATGTTTTGACAAGCTACCGTGCCACAAAATCCAGAGAAGAAGTGCCAGCAGCACCATCCCAGTCGTTTTCAAAAGCAGTTCTGCCCACAGGAATAACAGTTCTAGTCAAGAAGATTGAGTGGGAAGCGAGGAACATTAAGGTCGTGTCAGAGTTTATAATGCGACTGGGAAATGCAAGGCACAAGAATTTAATCAGACTTCTGGGGTTTTGCCACAACCAGCATCTAGCTTATCTTTTATATGATTACTTACCCAATGGGAATTTGGCTGAGAAAATTGGAACGAAAAGGGATTGGACAGCTAAATTCAGAATTGTGGTTGGCATTGCACGGGGCCTTTGCTTCCTTCACCATGACTGTTACCCAGCCATACCCCATGGAGACTTGAAGTCGAGCAACATAGTATTTGATGAAAATATGGAACCCCACTTGGCGGAATTTGGGTTCAAGCATGTGTTGAAGTTGAGCAAAGGCTCATCTCCTGCCACAACTTTTAGCTGGGAAACAGAGTATACTGAAGCCATGAAAGAGGAACTCTACGCTGATATCTACAAATTTGGGGAGATGATTCTGGAAATTTTAACCGGAGGAAGGTTGACAAATGCAGCAGCTGGCATACACAGCAAACCAAAGGAGGTTCTTCTTAGAGAAATTTACCATGAGAATGAAGCAAGTTCTGCCTGTTCATTGCAAGAGATGAAACTGGTTATTGAAGTGGCTTTGCTTTGCACCAGAAGCAAGTTATCTGATCGTCCAACCATGGAAGATGTCTTAAAGCTTTTGTCAGGGTTAAAGCCTCTAGAAGATATCAAACCTCCAAAAGAAGGATACTAA 3009 0.4214 MHFHPTQRNKYSYFRLTPFPLLAWVLTIVPPLSCALQVPMEIFKCFYFNLLATFIFFFLAVLAIDPYSEALLSLKSELVDDDNSLHDWVVSSEGNSTGKSYACSWSGIKCDKDLTIVTAIDLSMKKLGGVISGKQFSVFTKLADLNLSHNFFSGQLPVEIFNLTSLTSLDISRNNFSGLLPGGISSLQNLVVLDAFSNSFSGPLPAELSQLEHLKVLNLAGSYFKGPIPSAYGSFRSLEFLHLAGNLLSGNLPPELGSLKTVTHMEIGYNFYQGFIPFQFGNMTELRYLDIAGANLSGPIPKQLSNLTNLQSLYLFRNQLTGSIPSEFSKIKPLTNLDLSDNLISGSIPESFSALENLRLLSLMYNDMSSTVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSNLMWVDVSTNNFTGSIPPDICMRGVLYKLILFSNRFTGGLSPSLSNCSSLVRLRLEDNFFTGKIPLKFSHLPDISYVDLSKNKFVGGIPSDISQASKLTYFNVSNNLLLGGIIPAQTWSLSLLQNFSASSCGISGNLPPFLSCKSISVIELDRNNLSGMIPSTVSNCRTLENIKLSDNNLSGPIPEELASIPVLGVVDLSNNNFNGPIPAKFGTSSSLRLLNVSFNCITGSIPTGKLFKFMDSSAFVGNSELCGAPLRPCPDSVGILGSKGTWKITSIVLLCAGLIIFLAALAFGILYFKRGVKSQWKMVSFVGLPQFTANDVLTSYRATKSREEVPAAPSQSFSKAVLPTGITVLVKKIEWEARNIKVVSEFIMRLGNARHKNLIRLLGFCHNQHLAYLLYDYLPNGNLAEKIGTKRDWTAKFRIVVGIARGLCFLHHDCYPAIPHGDLKSSNIVFDENMEPHLAEFGFKHVLKLSKGSSPATTFSWETEYTEAMKEELYADIYKFGEMILEILTGGRLTNAAAGIHSKPKEVLLREIYHENEASSACSLQEMKLVIEVALLCTRSKLSDRPTMEDVLKLLSGLKPLEDIKPPKEGY 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0842 1002 Pfam Protein tyrosine and serine/threonine kinase 756 985 IPR001245 GO:0004672|GO:0006468
Glsi13g0842 1002 Gene3D Phosphorylase Kinase; domain 1 727 806 - -
Glsi13g0842 1002 ProSiteProfiles Protein kinase domain profile. 711 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0842 1002 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Glsi13g0842 1002 Pfam Leucine rich repeat 334 392 IPR001611 GO:0005515
Glsi13g0842 1002 SUPERFAMILY RNI-like 120 463 - -
Glsi13g0842 1002 FunFam Leucine-rich repeat receptor-like protein kinase TDR 229 333 - -
Glsi13g0842 1002 Pfam Leucine rich repeat N-terminal domain 69 111 IPR013210 -
Glsi13g0842 1002 Gene3D Ribonuclease Inhibitor 326 428 IPR032675 -
Glsi13g0842 1002 SUPERFAMILY L domain-like 410 664 - -
Glsi13g0842 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Glsi13g0842 1002 SMART LRR_typ_2 379 403 IPR003591 -
Glsi13g0842 1002 SMART LRR_typ_2 163 186 IPR003591 -
Glsi13g0842 1002 SMART LRR_typ_2 235 259 IPR003591 -
Glsi13g0842 1002 SMART LRR_typ_2 307 330 IPR003591 -
Glsi13g0842 1002 Gene3D Transferase(Phosphotransferase) domain 1 807 996 - -
Glsi13g0842 1002 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 213 980 - -
Glsi13g0842 1002 FunFam Leucine-rich repeat receptor-like protein kinase TDR 352 666 - -
Glsi13g0842 1002 FunFam Leucine-rich repeat receptor-like protein kinase TDR 809 994 - -
Glsi13g0842 1002 Gene3D Ribonuclease Inhibitor 429 668 IPR032675 -
Glsi13g0842 1002 SMART serkin_6 722 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0842 1002 SUPERFAMILY Protein kinase-like (PK-like) 750 986 IPR011009 -
Glsi13g0842 1002 Gene3D Ribonuclease Inhibitor 66 226 IPR032675 -
Glsi13g0842 1002 Gene3D Ribonuclease Inhibitor 227 325 IPR032675 -
Glsi13g0842 1002 FunFam Leucine-rich repeat receptor-like protein kinase 67 228 - -
Glsi13g0842 1002 FunFam Leucine-rich repeat receptor-like protein kinase TDR 722 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0842 Glsi-ChrGlsi13 26953323 26956695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0842 49 987 Receptor kinase-like Gene Family AT5G51350 55.672 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi13g0842 PK_Tyr_Ser-Thr 8.3e-19 CL0016