Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0838 ATGGCGCCTCCGAAGCTCACAGAGTACGAACGCAAGAGACTGGAGAATATTCGCCGGAATGATGAAATGATGGCTGCCCTTAAGGTCCATTCCAAAGCCGCCGAGGTTTCCGCCGCAGCCAAGCGCTCAAGGGTTGGAACCAAATCTTACTCTGTGAAATCAGAAAAGAAGCCCAAAACCGAAACCCCAGTTGTGATCCGGCGGTCCTTACGTACCAGAGGTATTCCACCCGATTCCAAAGGTGTAAATAACGTCGCTTTAGATTCTGTCGATGTTTCCGATAAATCACCAACCAAAATGGAGCCTTCTGTCAGAGTTTTGGGTCCTCTTGCCATAAGAGATGCTTATAGTGGGGAGGGGTCTGACCACTTGTTCGTTGAAGCAATTGTGGATTTGGCTAAGAAGGAAGTCCATTCTCGTGCTTCATTTGGAGAAGCATTCGGTTATAGTAAATATGGGAATATTTTGAATGATGTGAAGAAGGAAAGCGTTGAGATTTCTTGTGATGTAAAAAGGAGAAAAGAGAACAAGGTTGGGGCTCCGGTGAAGTTGGAATCTTTGAATGATGTAAAGGAGGAAAGCGTAGGGGTTTCTTGTGATGTAGAAAGGAGAAAAGAGAACAAGGTTGGGGCTTCGGTGAAGTTGGAATCTTTGACTTTGGATTTCGAGAATGTAGCACGGATTGTTCCAGGAAGGATAACTGTTGCACGATTTTTTCCTTCAAGTAGTGCGAAATTGATCGTGGCAGGTAATAAGTTTGGAAATCTTGGATTCTGGGACCTTGGTCATGTAAATAACGAGGGAAGTGAAGTCCATTTATACCGCCCCCACCCAGCTCCTATTTCTGGTATCTTGGTTCAAAGACATTGTTTGTCGAAGATTTACACTAGTTGTTATGATGGATTTGTTCGATTAATGGATGCTGAAAAGGAGATTTTTGACCTCGTATTTAGAAGTGATGAAAGTATATACACCCTCTCACAACCAAAAAATGATTCAAACTGCCTATATTTTGGCGAGGGTCGTGGACCTTTGACTGTTTGGGATAACAGGATGGGCAAATGTTCATCCCACTGGGCTTTGCATGAAGATAGGATTAATACAATAGATTTCAACTCTGAAAACCCTCACATTATGGCAACTAGCTCTTCCGATGGAACTTCCTGCCTTTGGGATTTGAGGTATAATAATCGGGATAAACTGAGAGTCTTGAGGACATTTACACACCAAAGGGCTGTGCATTCTGCTTACTTCTCACCTTCTGGGTGTTGCCTGGCAACTACAAGCTTGGACAACACAATTGGTATATACGGTGGGGTTAACTTCGAGGATGCATCAACAATTTACCATGACAATCAGACTGGCAGATGGCTTTCTTCTTTCAGAGCAATATGGGGTTGGGATGATTCGTACATCTTCGTTGGCAATATGAAAAGAGGAGTTGACGTTGTTTCCCCAGTTCACAAGAAAACAATTATGACTCTACAGAGCCCACACATATCTGCCATTCCATGCAGATTTGATGCGCATCCTTACGAGGTTGGGACTCTCGCAGGAGCTACAAGTGGGGGCCAGGTCTATGTGTGGACATTATCATAG 1599 0.439 MAPPKLTEYERKRLENIRRNDEMMAALKVHSKAAEVSAAAKRSRVGTKSYSVKSEKKPKTETPVVIRRSLRTRGIPPDSKGVNNVALDSVDVSDKSPTKMEPSVRVLGPLAIRDAYSGEGSDHLFVEAIVDLAKKEVHSRASFGEAFGYSKYGNILNDVKKESVEISCDVKRRKENKVGAPVKLESLNDVKEESVGVSCDVERRKENKVGASVKLESLTLDFENVARIVPGRITVARFFPSSSAKLIVAGNKFGNLGFWDLGHVNNEGSEVHLYRPHPAPISGILVQRHCLSKIYTSCYDGFVRLMDAEKEIFDLVFRSDESIYTLSQPKNDSNCLYFGEGRGPLTVWDNRMGKCSSHWALHEDRINTIDFNSENPHIMATSSSDGTSCLWDLRYNNRDKLRVLRTFTHQRAVHSAYFSPSGCCLATTSLDNTIGIYGGVNFEDASTIYHDNQTGRWLSSFRAIWGWDDSYIFVGNMKRGVDVVSPVHKKTIMTLQSPHISAIPCRFDAHPYEVGTLAGATSGGQVYVWTLS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0838 532 Gene3D - 224 531 IPR015943 GO:0005515
Glsi13g0838 532 FunFam WD repeat-containing protein 76 224 531 - -
Glsi13g0838 532 PANTHER UNCHARACTERIZED 4 530 - -
Glsi13g0838 532 SMART WD40_4 352 392 IPR001680 GO:0005515
Glsi13g0838 532 SMART WD40_4 400 438 IPR001680 GO:0005515
Glsi13g0838 532 SMART WD40_4 267 307 IPR001680 GO:0005515
Glsi13g0838 532 Pfam WD domain, G-beta repeat 354 392 IPR001680 GO:0005515
Glsi13g0838 532 ProSitePatterns Trp-Asp (WD) repeats signature. 379 393 IPR019775 -
Glsi13g0838 532 MobiDBLite consensus disorder prediction 36 62 - -
Glsi13g0838 532 SUPERFAMILY WD40 repeat-like 230 529 IPR036322 GO:0005515
Glsi13g0838 532 MobiDBLite consensus disorder prediction 48 62 - -
Glsi13g0838 532 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 401 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0838 Glsi-ChrGlsi13 26932495 26935106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0838 324 483 U-box Gene Family AT1G04510 30.247 7.03e-07 50.1