Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0830 ATGAGTGTTCTGGCGGTAGACGACGACCTAATATGCCTCAAAGTATTGGAGAACCTGCTTCGCAAATGCCAGTATCAGGTTACTACGACTAATCAGGCAATTAAGGCGCTAAAAATGTTAAGAGAGAATAGAAATAAATTTGACCTTGTCATTAGTGATGTAAATATGCCAGACATGGATGGATTTAAGCTCCTTGAGCTAGTGGGGCTTGAAATGGACCTTCCTGTCATCATGTTGTCAGCGCACAGTGATACCAGGCTTGTGATGAAGGGTGTTACACATGGTGCATGTGACTATCTGTTGAAACCAGTTCGAATTGAAGAGCTTAAGAACATATGGCAACATGTAGTTCGAAGAAAGAAGTTTGATTGCAAGGATAAGAATAAGGCTTCCAATGAGAAGGTGAACAATTTGGCTGGGGAAGGTAGTCATGGAATCACATCAGAAAATAATTCAGATCAAAATAAAAAGGTGGGTAAAAGAAGAAAGGACCAAGGTGAGGATGAGGAAGAAGATGCTGAAGATAATGAACAAGAAGATAATGAGGAGGACCCATCATCGCAGAAGAAGCCTCGTGTAGTTTGGTCGGTTGAGCTGCACAGGAAATTTGTTGCTGCAGTTAATCAACTTGGCCTTGAAAAGGCTGTTCCGAAGAAAATTCTTGATATGATGAATGTTGAAGGACTTACACGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAACTCACCAAGTTAACATCGTTGCTGCAATGGGTAGTAATGATTCCATGTACTTGCGGATGGGTTCATTAGAGGGATATGGGGAGTTTCGCTCCTTGTCTGGATCAGGAAGGCCCTCTTCATCATTTGCATCTACTGGAATTTTTGGTCGACTGAACTCCCCATCTGCCTTGAACTTGAGAGGACTTGGTTCTTCTGGACTGATCCGCCCTGGACAGTCTCAAAACCTGAACAATCCTATAAACACACTTGGAAATCTTCAGCCATCTATCTTGCCTGCAAATCAAAGCTTGGGTTTGTATCAGGGCATTCCAACAGCCATGGAGGTTAGCCAGTCTCAAGGAAGAAACTGCACTACTGGTATTAGGCAGTTAAGTGCAATTGATGATTCAGGTGGTTTTACAGTTGCTCCTGTTGTTAGTGCAAACAATTCTGTGCCTTGTGTCTCAAGTAATCAATTAACGTTACAAGGAAACTCACAACAAACACATTGTATGGAAGCATTTAGAAATCAATCTTCTCTCAGAGCTGCTCCTTTGAACTCAGAATCTTTCGATATTGGCAGTTGTGGTTCTTCTAATTTGTTGGATTACGCTCGATGTAACGAAAGCTTGCTGGGTGCTGTTCAGCTATCTAAATTTCCTGCTAATTCTTTGCCATTGAATGAGACTTTCAGTAATGATCAACTACCTCCTAGTAGCTTAAATGTTTCTTCCTCAAATGCTCATCATATTGGTAACAACCCAGTTGATTTTTCTTCCCCAAGTGCAATTGCTGTTCCAATGGAGGATCCTAGAGGTGAGCTGCAATGCCAAGAAGGCTTAATTGGGAATGTCGTTCAGTCTTCAAGTTACATGCCACGGCAGAGCTGGGAACTACATAAGCAGGACTTCAACCAAAACATGAATTGTACTTTCAATTCTGTAAATTCCCTTGTTTCTTCTAATGGAGTCACAAGTTCCTTGGGGCAGGGTTTAAATCAGAACAATGCAATATGCAGCAAGAGGGTGGATGCGTCTTTGATTGACCAATTGAATGGGTCTACCCCATCAATCACTCGGCACAATGAAGTTGAGAAATTCTCTTCAGACACAAGGATGAAGTTGAATGATGCCTACATGTTGGAGCAGATGAAGTCCCAAGATGGTTTCATTCAGAATAGTTTTGGATCCTTGGATGACATCATGAATTCAATGGTTAAACGGGAGCAGAACGAGATGATGTTGATGGATGGAGAAATGGGATTTGATGCTTACCGCATTGGATCTTGTATCTGA 2019 0.418 MSVLAVDDDLICLKVLENLLRKCQYQVTTTNQAIKALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKKFDCKDKNKASNEKVNNLAGEGSHGITSENNSDQNKKVGKRRKDQGEDEEEDAEDNEQEDNEEDPSSQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDMMNVEGLTRENVASHLQKYRLYLKKATHQVNIVAAMGSNDSMYLRMGSLEGYGEFRSLSGSGRPSSSFASTGIFGRLNSPSALNLRGLGSSGLIRPGQSQNLNNPINTLGNLQPSILPANQSLGLYQGIPTAMEVSQSQGRNCTTGIRQLSAIDDSGGFTVAPVVSANNSVPCVSSNQLTLQGNSQQTHCMEAFRNQSSLRAAPLNSESFDIGSCGSSNLLDYARCNESLLGAVQLSKFPANSLPLNETFSNDQLPPSSLNVSSSNAHHIGNNPVDFSSPSAIAVPMEDPRGELQCQEGLIGNVVQSSSYMPRQSWELHKQDFNQNMNCTFNSVNSLVSSNGVTSSLGQGLNQNNAICSKRVDASLIDQLNGSTPSITRHNEVEKFSSDTRMKLNDAYMLEQMKSQDGFIQNSFGSLDDIMNSMVKREQNEMMLMDGEMGFDAYRIGSCI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0830 672 CDD REC_typeB_ARR-like 3 117 - -
Glsi13g0830 672 Pfam Myb-like DNA-binding domain 192 242 IPR001005 -
Glsi13g0830 672 SUPERFAMILY CheY-like 1 121 IPR011006 -
Glsi13g0830 672 Coils Coil 163 183 - -
Glsi13g0830 672 PIRSF RR_ARR_type-B 1 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Glsi13g0830 672 MobiDBLite consensus disorder prediction 133 191 - -
Glsi13g0830 672 Gene3D - 1 137 - -
Glsi13g0830 672 SMART REC_2 1 113 IPR001789 GO:0000160
Glsi13g0830 672 ProSiteProfiles Response regulatory domain profile. 2 117 IPR001789 GO:0000160
Glsi13g0830 672 FunFam Two-component response regulator 186 249 - -
Glsi13g0830 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 369 IPR045279 GO:0009736
Glsi13g0830 672 MobiDBLite consensus disorder prediction 168 182 - -
Glsi13g0830 672 Gene3D - 186 248 - -
Glsi13g0830 672 MobiDBLite consensus disorder prediction 133 153 - -
Glsi13g0830 672 Pfam Response regulator receiver domain 3 111 IPR001789 GO:0000160
Glsi13g0830 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 246 IPR017930 -
Glsi13g0830 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677
Glsi13g0830 672 SUPERFAMILY Homeodomain-like 188 247 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0830 Glsi-ChrGlsi13 26868981 26872743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0830 1 410 Response Regulator Gene Family AT2G25180 53.318 5.72e-124 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi13g0830 Response_reg 1.2e-23 CL0304