Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0816 ATGACAGCCTTGCAGCTTGTGCTGAGGAAGTCTTTAGCTCATGGTGGGCTTGCACGAGGACTCCATGAAGGTGCTAAGTCAATTGAAAAGCATGATGCACATCTCTGCGTGTTAGCTGAGGACTGTGACCAGCCAGATTATGTTAAACTGGTCAAGGCACTTTGCGCTGACCACAATATCAAGTTGATGACAGTTCCCAGTGCTAAAACTCTTGGTGAATGGGCTGGTTTGTGCAAGATTGATTCTGAGGGCAAAGCAAGGAAAGTAGTTGGTTGCTCCTGTGTTGTTGTGAAGGACTTTGGAGAGGAATCACCAGCGTTGGATGTTGTTCAGCAATATATCAAGTCTCAATAA 354 0.4576 MTALQLVLRKSLAHGGLARGLHEGAKSIEKHDAHLCVLAEDCDQPDYVKLVKALCADHNIKLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESPALDVVQQYIKSQ 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0816 117 FunFam 40S ribosomal protein S12 1 117 - -
Glsi13g0816 117 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 3 96 IPR004038 -
Glsi13g0816 117 SUPERFAMILY L30e-like 2 115 IPR029064 -
Glsi13g0816 117 PRINTS Ribosomal protein S12E family signature 7 20 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi13g0816 117 PRINTS Ribosomal protein S12E family signature 62 83 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi13g0816 117 PRINTS Ribosomal protein S12E family signature 87 100 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi13g0816 117 PRINTS Ribosomal protein S12E family signature 21 37 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi13g0816 117 PANTHER 40S RIBOSOMAL PROTEIN S12 1 116 - -
Glsi13g0816 117 Gene3D - 1 117 IPR029064 -
Glsi13g0816 117 ProSitePatterns Ribosomal protein S12e signature. 3 21 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0816 Glsi-ChrGlsi13 26793230 26794364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0816 2 117 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.862 7.38e-64 189