Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0813 ATGATTATGCAGCCTGGTAGCAGAGAAATGCAAGGAATTAACTCCCTCTTGAACTCTTCTCAAATCCCTCTTCAGGACCTCCATAACAGCAACCCCCAGATCCAAAACTCTCAGATGCATCCCCATCAGGTCAACCAGAGTTCCACTCCCTTCGACCCCACTTCCCACGATGATTTTCTCGACCAAATGTTCTCCAACCTTCCTTCCTGCTCCTGGCCCGACCTCAACCCCAAGCCCTTGTGGGACCTTAATCCTTCCGGTTCCATCCACATCAACGGCTCCGATGTCAAGCCCACAGACCTCTCCGACGAGTCCGTGCCCTCTAACGCAGAGAATGCTGCTTTCCAGTTTGACGACCAGTCCAACTTGGCCTCTAAATTTCAAAACCACCAGATCAGTGGCAGCTCTCCCACTACGAAGTCCACTGCGGCGGAGGCGGCGTTGATGCTTCAGCGGCAGCTTCTGATGTCCAGAGGTGTCCACGGAGTCGGTGAGTCTGGGCTCCTTCAGATACCGTTATCTTTGGGTGGAGGAGACTTCAAGCCCTCCCGGAACGACGTCGTTGACGGGTCATCGTTCAAATCTCCCAATCCGGCGGGTGAAGGCCCGGTCCAAGCTCTGTACAACGGGTTCGCCGGATCTATGCATGGCACCGGTCAAGCTTCGAGTCAAACTCACCATTTTCATCATCCTCAAGTTCAATCGGGAGGACAGATGCAGGGCCAGAACTATGGAAATTCAGGGGCAGCGACGAACCCAGCGCCGGCGAATGGAACTCCAGCACAGCCGAGGCAGAGGGTTAGAGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATAGCCGAGAGGTTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCCCTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCTTCAATGCTGGATGAGATAATAGATTATGTAAAGTTCTTACAACTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTTGCTCCCCTTGTTGCTGATATCTCCGCTGAGGGAGGAGGAGGCGACTGCATCCAAACCACCGCCAACGGTGGGGGCACCCTCCCTCGAAGCTCCAATGCCAACCAAACGGCGTCGTCCTCCAACGACACCCTCACCATGACGGAGCAGCAGGTGGCGAAGCTTATGGAGGAAGACATGGGTTCCGCCATGCAGTATCTGCAGGGAAAGGGTCTCTGCCTCATGCCCATCTCCCTCGCCACCGCGATCTCCACTGCCACGTGTCACTCCTCCAGGAACCCCTTGATGAACACCCCCACCAACCACCACCACCCCGTGGTGGGATCCAACGGGGAAGGACCCTCCTCTCCCAGCATGTCCGTCTTGACCGTGCAATCTGCCACGGTGGGTAACGGCGGCGCCGACAGCGCCGTTAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1461 0.5626 MIMQPGSREMQGINSLLNSSQIPLQDLHNSNPQIQNSQMHPHQVNQSSTPFDPTSHDDFLDQMFSNLPSCSWPDLNPKPLWDLNPSGSIHINGSDVKPTDLSDESVPSNAENAAFQFDDQSNLASKFQNHQISGSSPTTKSTAAEAALMLQRQLLMSRGVHGVGESGLLQIPLSLGGGDFKPSRNDVVDGSSFKSPNPAGEGPVQALYNGFAGSMHGTGQASSQTHHFHHPQVQSGGQMQGQNYGNSGAATNPAPANGTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISAEGGGGDCIQTTANGGGTLPRSSNANQTASSSNDTLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSSRNPLMNTPTNHHHPVVGSNGEGPSSPSMSVLTVQSATVGNGGADSAVKDAASVSKP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0813 486 Gene3D - 268 330 IPR036638 GO:0046983
Glsi13g0813 486 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 422 - -
Glsi13g0813 486 MobiDBLite consensus disorder prediction 432 471 - -
Glsi13g0813 486 MobiDBLite consensus disorder prediction 186 280 - -
Glsi13g0813 486 Pfam Helix-loop-helix DNA-binding domain 278 323 IPR011598 GO:0046983
Glsi13g0813 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 333 IPR036638 GO:0046983
Glsi13g0813 486 MobiDBLite consensus disorder prediction 432 486 - -
Glsi13g0813 486 SMART finulus 279 328 IPR011598 GO:0046983
Glsi13g0813 486 MobiDBLite consensus disorder prediction 215 259 - -
Glsi13g0813 486 MobiDBLite consensus disorder prediction 30 51 - -
Glsi13g0813 486 FunFam Transcription factor bHLH66 270 335 - -
Glsi13g0813 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0813 Glsi-ChrGlsi13 26776526 26779254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0813 260 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.167 8.70e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g0813 HLH 1.9e-09 No_clan