Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0810 ATGGCTTATGACAGCGCAGCTATCCAGCTTCGATATGGTGATTCTCACCGAAATTTTCCTTGGACTAGCATTACTGTTGAGGAGCCAAATTTTCAGAGACAATATAGCAAAGAGGATGTGCTTGATATGATAAAAGATGGTTCATACCAACCGAAATTTGCAGAGTTTCTGAGGATCCAGGCCCGGGCTCGGGCCTGTTACCAACTTTTTGAAGCAGCTAAGGGCCTCAACTTGTCTACAATGCAGAAAAGAGGAGGGCTCTCATATAAGCTACTTTTTGAAAAGGAACTGACACCTAGTGATGTGGGGAAGCTGAATAGACTTGTCATCCCCAAGAAAGATGCCATCACATATTTCCCTGACATTTCCGAAAGAGTAGAAGAAGATGCACAAGGCAGTGGGGTGGCTGACATGCAGCTAGGTTTCTTTGACAGGATGATGAGGTCATGGAGATTCCGGTACTGCTATTGGAAGAGCAGCCAGAGCTTTGTGTTCACAAGGGGTTGGAGCAGGTTTGTGAAAGATAAGCAGCTGAAGGCTAATGATGTTATTGCCTTCTACTTGTGCGTGTTGAAAGAAGGAGGAAAAGCGGTGGAGACATTCTTCATGATTGACTTTTCTAAGGGTGAAGAAAGTGGTAGCTCAGACGAAGGTGCTGATCACAATGTTGAACAAAGGTTGGATGTTAGTGAGAAAAAGCTTGAAGAGGAAATGATGGAAACTGACCCACCAAGCAGTACTGAGAAGAAAGGGTTTAGACTCTTTGGAGTTCAAATCATTTGA 783 0.4406 MAYDSAAIQLRYGDSHRNFPWTSITVEEPNFQRQYSKEDVLDMIKDGSYQPKFAEFLRIQARARACYQLFEAAKGLNLSTMQKRGGLSYKLLFEKELTPSDVGKLNRLVIPKKDAITYFPDISERVEEDAQGSGVADMQLGFFDRMMRSWRFRYCYWKSSQSFVFTRGWSRFVKDKQLKANDVIAFYLCVLKEGGKAVETFFMIDFSKGEESGSSDEGADHNVEQRLDVSEKKLEEEMMETDPPSSTEKKGFRLFGVQII 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0810 260 Gene3D - 89 216 IPR015300 -
Glsi13g0810 260 SMART B3_2 93 197 IPR003340 GO:0003677
Glsi13g0810 260 CDD B3_DNA 92 188 IPR003340 GO:0003677
Glsi13g0810 260 Pfam B3 DNA binding domain 93 189 IPR003340 GO:0003677
Glsi13g0810 260 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 259 IPR044800 GO:0003700
Glsi13g0810 260 SUPERFAMILY DNA-binding pseudobarrel domain 91 189 IPR015300 -
Glsi13g0810 260 ProSiteProfiles B3 DNA-binding domain profile. 93 205 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0810 Glsi-ChrGlsi13 26760606 26761388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0810 2 259 RAV Transcription Factor Family AT1G50680 47.232 5.72e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi13g0810 B3 2.7e-23 CL0405