Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0808 ATGTGTGACAAAGGTAAGGATGGTCACTCAACCTTGCTCCATGGAAAGTATGAGCTCGGTCGCCTTCTGGGTTATGGCACTTTCGCCAAGGTCTATCACGCCAGAAACTTGCAGACAGGGAGAAGTGCGGCCATGAAGGTGGTGGGCAAAGAGAAGGTTATAAAGGTGGGCATGATGGAACAGATCAAGAGGGAGATTTCGGTGATGAATATGGTGAAGCACCCCAACATCGTCCAGCTGCATGAAGTTATGGCCAGTAAATCCAAGATCTATATTGCCATGGAGCTCGTTCGAGGCGGTGAGCTCTTCAATAAGATTGCTAGAGGCCGGTTGAGAGAAGATGTAGCCAGAGTCTATTTCCAGCAATTGATTTCGGCCATCGATTTTTGCCACAGTCGCGGCGTTTACCACCGCGATCTCAAGCCGGAGAATCTACTTCTCGATGAGAATGGGAACTTGAAAGTCACTGACTTCGGCCTCAGTACTTTCTCTGATCACTTAAGGCAAGATGGGTTGTTGCATACAACTTGTGGCACTCCGGCGTATGTGGCGCCGGAGGTAATCGGAAAGAAGGGCTACGACGGTGCCACGGCGGATCTGTGGTCTTGTGGTGTCATCCTTTATGTGCTTCTTGCTGGTTTCTTACCCTTTCAAGACGACAATTTGATGTCCATGTACAGAAAGATTTACAGGGGTGACTTCAAATGCCCTCCGTGGTTCTCTTCCGAAGCTCGCCGCCTCATCACGAAACTCCTCGACCCGAACCCGAATACCAGGATAACGATTTCAAAGGTCATGGACTCGTCTTGGTTCAAGAAATCGGTTCCCAAGAGCATGTCGAGGACGAAAGATGAGCAAGAATTCGATTTCGAATATAGTTGCGAGAAATCGAAGCAGCAGGCGGCGACGATGAACGCGTTCCATATAATATCGCTATCGGAAGGCTTCGATTTGTCGCCTTTGTTCGAGGAGAAGAAGAGGGAAGCGAAGGAGGAGCTGAGATTCGCCACGACGAGGCCGGCAAGCAGCGTGATATCGAGGCTAGAGGAGGTGGCGAAGGCGGAGAGATTCGACGTGAAGAAGAGCGAAACCAAGGTGAGGCTGCAGAGGCAAGAATGTGGAAGAAAGGGGAAGCTGGCGATTGCGGCGGAGATCTACGCCGTGACGCCGTCGTTGGTGGTGGTGGAGGTGAAGAAGGATAACGGCGATACCTTAGAGTACAACCAGTTCTGCAGTGAGGAGCTCCGACCTGCACTCAAAGACATCGTGTGGACGTCGCCCGCCGAGAACCCAACACCTGCTTGA 1305 0.5142 MCDKGKDGHSTLLHGKYELGRLLGYGTFAKVYHARNLQTGRSAAMKVVGKEKVIKVGMMEQIKREISVMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDENGNLKVTDFGLSTFSDHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGATADLWSCGVILYVLLAGFLPFQDDNLMSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNTRITISKVMDSSWFKKSVPKSMSRTKDEQEFDFEYSCEKSKQQAATMNAFHIISLSEGFDLSPLFEEKKREAKEELRFATTRPASSVISRLEEVAKAERFDVKKSETKVRLQRQECGRKGKLAIAAEIYAVTPSLVVVEVKKDNGDTLEYNQFCSEELRPALKDIVWTSPAENPTPA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0808 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Glsi13g0808 434 FunFam Non-specific serine/threonine protein kinase 299 424 - -
Glsi13g0808 434 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0808 434 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Glsi13g0808 434 Gene3D Kinase associated domain 1, KA1 298 425 - -
Glsi13g0808 434 SUPERFAMILY Protein kinase-like (PK-like) 14 283 IPR011009 -
Glsi13g0808 434 CDD STKc_SnRK3 16 270 - -
Glsi13g0808 434 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Glsi13g0808 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 421 - -
Glsi13g0808 434 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Glsi13g0808 434 CDD CIPK_C 305 420 - -
Glsi13g0808 434 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0808 434 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Glsi13g0808 434 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0808 434 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Glsi13g0808 434 FunFam Non-specific serine/threonine protein kinase 7 300 - -
Glsi13g0808 434 Pfam NAF domain 302 361 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0808 Glsi-ChrGlsi13 26755715 26757019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0808 2 434 CBL-interacting serine-threonine protein kinases AT4G30960 76.364 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi13g0808 Pkinase 7.1e-73 CL0016