Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0798 ATGGGTTTGGGAGTATTTGGTTCTATTGTATTTCTGACGTTTTTCTTCAAGCATTTGGCGTGCCAGCAACCAAATACTGATGAATTCTTCGTCTCTGAGTTCTTCAAGAAGATGGGTTTATCATCGTCCCAAGCCTACAACTTCTCTGGTTCTGTTTGTTCATGGCAAGGAGTCTTCTGTGACGCCGATAAAGAACACGTCGTTGAGTTAATGGCTTCTGGTATGGGCCTCTCTGGCTCTGTTTCTGACACAACCATTGGCAAACTCACCAAGCTCCAACATTTGGATCTTAGCAACAACAAAATCACTGGCTTGCCTTCTGATTTCTGGAGTTTAAGCTCTCTGAAGAGTCTTAACCTCTCATCCAACCAGATATCTGGTTCACTGACCAACAATTTTGGCAACTTTGGTGTTCTTGAAATCTTCGACTTATCCGGCAACAAACTTTCTGGGAAAATTCCTGAAGCTATTAGCTCCCTTGTGAGTTTGAGAATCCTCAAACTTGACCAGAACAGATTTGAACAGAGCATACCTTCTGCGATTCTTCAATGTCAGTCTCTTGTATCAATTGATCTTTCATCAAATCAGTTTAATGGAACTCTTCCGGATGGTTTTGGAGCTGCGTTTCCTAAGCTCAAAATCTTGAACCTTGCAAGGAATAATATTCATGGTCGCGATTCAGATTTTTCTGGGTTAAAATCCATTACTAGTCTTAACATATCTGAAAATTCGTTTCAGGGTTCTGTTCTGGGTATGTTTCAGGAACAGTTGGAGGTCATTGACCTTAGCAGGAACCAATTTCAGGGTCACATTTCTCAGGTAAAGTTCAACTCTGCATTCAATTGGTCTCATTTAGTTTATATGGATTTGTGTGAGAATCGGCTTAGTGGGGAAATTTTCCAGAATTTGAATGAAGCCCAGAATCTTAAACACCTTAATCTTGCTCACAATAAATTTTCCAGCCAGAAATTTCCGCAAATTGAAATGCTCTCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGGTTGGTCACATTCCTGATGAAATATCACAACTGAGTAATTTGAAGGCATTTGATATTTCTATGAATCATCTTACAGGGAAAATTCCATTACTGAGGAATAAAAACCTCCAAATTCTTGACCTTTCAAACAACAATTTGAGTGGAGAAATCCCTCCATCTGTCTTGGAGAAACTCCCAAGGATGGAGAAATATAACTTCTCTCACAATAATTTGACCTTCTGTTCTTTGGGAATCAACCCCAATATCCTGCAAACAGCTTTCTTTGGATCATCAAACAGTTGTCCAATTGCTGCAAACCCCAGTCTTTTCAAAAGAAGAACCACTGATCATAAGGGAATGAAACTAGCTTTGGCATTGACCCTCTCAATGATCTGCTTACTTTCTGGGCTTTTATTTCTAGCATTTGGTTGCCGAAGGAAAACCAAAATGTGGGCAGTTAAGCAAACTTCATATAAAGAAGAGCAGAATATTTCGGGTCCCTTCTCATTCCAGACTGATTCAACTACCTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTATTGAATATTACATTTGCTGATCTCTTGTCCTCAACTACAAATTTCGATCGGGGTACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGAGGTTTTCTACCCGGTAATATTCATGTAGCAGTCAAAGTTTTGGTTGTTGGGTCTACATTGACAGATCAAGAAGCTGGAAAAGAGCTTGAGTATCTTGGTAGAATTAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGCTTTGCTGGGGATCAAAGGATTGCCATATATGATTACATGGAGAATGGGAACTTGCAAAATTTGCTTCATGACTTGCCACTTGGGGTACAGAGGACAGATGATTGGAGCACAGACACATGGGAAGATGAAGATGATGATAATGGCATTCGAAATGCTGGCTCTGAGGGCTTACTCACATCTTGGCGATTTCGCCACAAAATCGCCCTTGGCACTGCCCGAGCATTGGCATTTCTGCATCATGGGTGTTCACCTCCAATTATTCACAGAGATGTTAAAGCTAGCAGTGTTTATTTGGACTATTACTTGGAGCCAAGGTTGTCTGATTTTGGGCTGGCTAAAATTTTTGGAAGTGGCTTGGATGAGGAGATTGCGCGTGGTTCTCCTGGCTATGTTCCTCCAGAGTTTTCTCAGCCAGAATATGACTCCCCAACACCAAAATCTGATGTTTACTGTTATGGGGTTGTTCTCTTTGAGCTAATAACTGGGAAAAAACCAGTTGGAGATGATTATCCTGAAGAGAAAGAAGCAACTTTGGTGACTTGGGTGAGAGGACTGGTGAGAAAGAACCTAGCTTCAAGAGTTGTTGATCCAAAAATTAGTGATGCAGGACTGGATCGCCAAATGGAGGAAGCCATTAAGATTGGATATCTCTGCACTGCTGATCTTCCCTCTAAGCGACCAAGCATGCAGCAGATAGTGGGACTACTTAAAGATATTGAACCTACTGCTAATTATTGA 2568 0.41 MGLGVFGSIVFLTFFFKHLACQQPNTDEFFVSEFFKKMGLSSSQAYNFSGSVCSWQGVFCDADKEHVVELMASGMGLSGSVSDTTIGKLTKLQHLDLSNNKITGLPSDFWSLSSLKSLNLSSNQISGSLTNNFGNFGVLEIFDLSGNKLSGKIPEAISSLVSLRILKLDQNRFEQSIPSAILQCQSLVSIDLSSNQFNGTLPDGFGAAFPKLKILNLARNNIHGRDSDFSGLKSITSLNISENSFQGSVLGMFQEQLEVIDLSRNQFQGHISQVKFNSAFNWSHLVYMDLCENRLSGEIFQNLNEAQNLKHLNLAHNKFSSQKFPQIEMLSGLEYLNLSKTSLVGHIPDEISQLSNLKAFDISMNHLTGKIPLLRNKNLQILDLSNNNLSGEIPPSVLEKLPRMEKYNFSHNNLTFCSLGINPNILQTAFFGSSNSCPIAANPSLFKRRTTDHKGMKLALALTLSMICLLSGLLFLAFGCRRKTKMWAVKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSSTTNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLVVGSTLTDQEAGKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDYMENGNLQNLLHDLPLGVQRTDDWSTDTWEDEDDDNGIRNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYYLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQPEYDSPTPKSDVYCYGVVLFELITGKKPVGDDYPEEKEATLVTWVRGLVRKNLASRVVDPKISDAGLDRQMEEAIKIGYLCTADLPSKRPSMQQIVGLLKDIEPTANY 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0798 855 SUPERFAMILY Protein kinase-like (PK-like) 524 846 IPR011009 -
Glsi13g0798 855 ProSiteProfiles Protein kinase domain profile. 547 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0798 855 PRINTS Leucine-rich repeat signature 112 125 - -
Glsi13g0798 855 PRINTS Leucine-rich repeat signature 92 105 - -
Glsi13g0798 855 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Glsi13g0798 855 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Glsi13g0798 855 SUPERFAMILY L domain-like 45 423 - -
Glsi13g0798 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 139 274 - -
Glsi13g0798 855 Gene3D Ribonuclease Inhibitor 375 451 IPR032675 -
Glsi13g0798 855 FunFam Nuclear pore complex protein NUP107 30 179 - -
Glsi13g0798 855 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Glsi13g0798 855 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Glsi13g0798 855 Pfam Protein kinase domain 551 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0798 855 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Glsi13g0798 855 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515
Glsi13g0798 855 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Glsi13g0798 855 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Glsi13g0798 855 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Glsi13g0798 855 Gene3D Transferase(Phosphotransferase) domain 1 623 854 - -
Glsi13g0798 855 SMART LRR_typ_2 209 231 IPR003591 -
Glsi13g0798 855 SMART LRR_typ_2 112 135 IPR003591 -
Glsi13g0798 855 SMART LRR_typ_2 160 184 IPR003591 -
Glsi13g0798 855 SMART LRR_typ_2 330 354 IPR003591 -
Glsi13g0798 855 SMART LRR_typ_2 377 400 IPR003591 -
Glsi13g0798 855 SMART LRR_typ_2 89 111 IPR003591 -
Glsi13g0798 855 Gene3D Ribonuclease Inhibitor 277 374 IPR032675 -
Glsi13g0798 855 Gene3D Ribonuclease Inhibitor 178 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0798 Glsi-ChrGlsi13 26691448 26694015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0798 39 849 Receptor kinase-like Gene Family AT5G07280 31.713 1.94e-111 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Glsi13g0798 Pkinase 1.4e-30 CL0016