Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0796 ATGCCTGAGCAAGAGAGCTTCGAAGCTCTCCCAAAGAGAAATTCTGAGGATCGAAAAGAACATGAAAATGAATCCGAGGGTGATGAGGATGAGGAAGAAGAAAAAGAGGAGGAGCAACTGAAACGAGTCACTGAAGAACTGTCTAGCGAGTTACAGAGTTTTAAAGCTCCTCCAGATGAGGAAGAGCCGAGAGAGTCTAATTTAGGAACCCTAATTGTGCCCTCATCGCTTGCATCGGCGGTGACCGATCAGCGTGCCGATTTGCAGGCGAGCTCTACTACGGAGATGGCTGGGAAAGCCGAAAGTAAGGAGCCAATTGGACCTTCTGACAAGAAAATTATAGCAAGAGAAGCAGTTCAGGCAGCTCAGAAACAGACAGAAAATCAACTTCAGCTTCCCGTATGCTCAACTCAATTGTATGAACTATCTCCAATTTCTGTTACACAATCTTTATCATCTGTTCCAAGTCCAACTGTACCAGCACAAAGACTGTCTCCTCAGAAGGTTAATAACGTACATATGCCAGAAGCAGACAAGAAAAATTCTTCTGGTGGTAAAACCTTATCTGCTGTTTCTGTTGCAAGGAGATCTGCATCGGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACTGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGACTGTTGTGCGAAGAAGATTGAATGTTGTGATCATTCAGGCCATGTGATAGAGATAGTTTATAAAAGTCAACATAGCCATGAACCACTGTGGAAAACTAACTCCAATGAGCAAAGTAAGCCCATGGCATCCAATGAACCTACTGTGAAAATGAGTGTTCCAGAACAGTCCATCAGAGTGCTCAATGATTCAGATCGATCCCCTTTTTCAAAAAAATCTCAACAAGCAGCACCGCGCAGTGATGATAAGAAACAAGAAAACTCATCTGATCTCAGTGAGAATGGTAAAGTTATTTTGAAGGAGGATCATGTTGATGAACCAGAGCCAAAAAGAAGAGTGAAGAAAGGTGACTTAGCATGCTTGGATTCGCATGTGAAGCCTGGAAAGAAGCCTAAGCTTGTTGTACATGCAGTAGTGGATGTGGGGATATCAGGTGATGGATACCGCTGGCGCAAGTATGGACAGAAAATGGTCAAGGGTAATCCTCATCCCAGGAATTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGTAAGCAGATTGAGAATGCTGTAGATAACTCAAACGCTGTCATCATAACATATAAGGGAGTACATGACCACGACATGCCTGTGCCTAAGAAACGACAGGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCCCCTGCTTCTTTGAACAATTTGCACTCGAAGAATACTGAATTATTGCAAAACCAAAAAAGTTCTACTCAATCGTCTGTGGACACAGAAGGAGAAATAACTGGAGAAGCCTTGGAACTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACTCTTCTGAGCATTGGTTTTGAAATCAAGCCTTCCTGA 1533 0.4416 MPEQESFEALPKRNSEDRKEHENESEGDEDEEEEKEEEQLKRVTEELSSELQSFKAPPDEEEPRESNLGTLIVPSSLASAVTDQRADLQASSTTEMAGKAESKEPIGPSDKKIIAREAVQAAQKQTENQLQLPVCSTQLYELSPISVTQSLSSVPSPTVPAQRLSPQKVNNVHMPEADKKNSSGGKTLSAVSVARRSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDHSGHVIEIVYKSQHSHEPLWKTNSNEQSKPMASNEPTVKMSVPEQSIRVLNDSDRSPFSKKSQQAAPRSDDKKQENSSDLSENGKVILKEDHVDEPEPKRRVKKGDLACLDSHVKPGKKPKLVVHAVVDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKQIENAVDNSNAVIITYKGVHDHDMPVPKKRQGPPSAPLVAAAAPASLNNLHSKNTELLQNQKSSTQSSVDTEGEITGEALELGGEKAMESARTLLSIGFEIKPS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0796 510 Pfam WRKY DNA -binding domain 200 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 Pfam WRKY DNA -binding domain 373 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 MobiDBLite consensus disorder prediction 303 339 - -
Glsi13g0796 510 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 Gene3D WRKY domain 356 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 Gene3D WRKY domain 185 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 ProSiteProfiles WRKY domain profile. 366 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 SMART WRKY_cls 371 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 MobiDBLite consensus disorder prediction 258 339 - -
Glsi13g0796 510 MobiDBLite consensus disorder prediction 258 302 - -
Glsi13g0796 510 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 151 469 IPR044810 GO:0003700
Glsi13g0796 510 SUPERFAMILY WRKY DNA-binding domain 364 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 FunFam WRKY transcription factor 361 432 - -
Glsi13g0796 510 SUPERFAMILY WRKY DNA-binding domain 196 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi13g0796 510 Coils Coil 18 53 - -
Glsi13g0796 510 MobiDBLite consensus disorder prediction 69 98 - -
Glsi13g0796 510 MobiDBLite consensus disorder prediction 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0796 Glsi-ChrGlsi13 26666472 26671863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0796 145 508 WRKY Transcription Factor Family AT4G30935 52.703 1.08e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi13g0796 WRKY 9.3e-24 CL0274