Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0789 ATGAAGGAGAAGAGAGTTAGCAATATTTATATGTTGGATGACTTGGACTCCAGACTATCTTCATCTTCTGATGCTGGAGTTAAAAAATGTGTATTTGGTATTGCTAAATTAAACCATGGTGGTCATGCAAGCAGTGGAACTTCTGGATCTTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGAGTATCTAGGGCAGTCTTCCCAGAAGACCTTAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTGTTATGGAATAAGCTTTTTGTTGTCTCATGCATTTTGGCTGTCTCTGTTGATCCATTGTTTTTTTATCTCCCTGTCATCAATGATCCATTAAACTGTCTTGGTATAGATCGAAAGTTGGCAATCATAGTCACCACCCTGAGGACAGTTATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATAGCTCCATCATCTCGCGTCTTTGGACGGGGTGAGCTTGTGATAGATCCATCACAGATAGCCAAGCGATACATGCGGCGGTATTTCATCATTGATTTTCTATCTGTGTTGCCCTTGCCTCAGATTGTAGTTTGGAGGTTTCTTCAGAGGTCAAAAGGTTCAGATGTACTGGCAACAAAGCAAGCCTTGCTGTTCATTATATTGCTTCAGTATATTCCTAGATTTCTCCGGATGGTACCATTGACTTCAGAACTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATCTGCTATTATACATGCTTGCTAGTCATATAGTTGGCGCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTCATGCTGGCAGAAGGCTTGTAGTGAAAATGGATGCAATAAAAATTTCTTGTATTGTGGAAACCAGCACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTGAAGGTATTCTCAAGTCAAAGTGCTCTGCTGATGATGATAATCCCTCTTTTGATTATGGAATTTTCACACAAGCATTTTCATCTGGCATTGTTTCATCTAAGAAGTTCATCTCCAAATACTGTTATTGTTTATGGTGGGGGCTACAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACCAGCACCTATCCTGGGGAGGTTATCTTCTCAATAGCGCTAGCCATCTTTGGGCTTATCCTCTTTGCGCTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTTCCCCATGAGCTTAGAGAGCGCGTTAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTCTACCAAAGGATCTTAGAAGAGATATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCACTATTCGAGAGTATGGACGAGAGATTGCTTGATGCAATTTGTGAGAGACTGAAACCATGTTTATTTACAGAGAGTACTTACATTGTTCGGGAAGGAGATCCAGTTGACGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTTAACCGCAGTTTGTTAAAAGAGGCTGACTTTTGTGGGGAGGAGCTTTTAACCTGGGCACTGGATCCCAAATCTGGTTCTAACCTTCCATCTTCTACTCGAACAGTGAAGGCATTAACAGAGGTTGAGGCTTTTGCCTTGATTGCTGAAGAGTTAAAATTTGTTGCAAGTCAATTTAGGCGCCTCCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCACAACAATGGAGAACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAGAGAAAGATTATGGAGCTACGTCGAAAAGAAGAATCTGGGGAGTCAGGAGGAACTCGCAACAATGTCAGTGGTGGTTCATTCAGCCTTGGTGCCACCTTCTTAGCCTCAAGATTTGCAGCCAATGCTCTTCGTGGTGTACATCGCAATCGGATTGCTAAGAGTGCTAGGGAGTTGGTGAAACTACAAAAACCTCCGGAGCCCGACTTTACTGCAGATGATGCAGACTAA 2172 0.4263 MKEKRVSNIYMLDDLDSRLSSSSDAGVKKCVFGIAKLNHGGHASSGTSGSFKRGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVVSCILAVSVDPLFFYLPVINDPLNCLGIDRKLAIIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPSQIAKRYMRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQKACSENGCNKNFLYCGNQHMEGYSAWQNRSEGILKSKCSADDDNPSFDYGIFTQAFSSGIVSSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPHELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKIMELRRKEESGESGGTRNNVSGGSFSLGATFLASRFAANALRGVHRNRIAKSARELVKLQKPPEPDFTADDAD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0789 723 CDD CAP_ED 496 627 IPR000595 -
Glsi13g0789 723 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Glsi13g0789 723 Gene3D Helix hairpin bin 424 487 - -
Glsi13g0789 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 717 - -
Glsi13g0789 723 SUPERFAMILY Voltage-gated potassium channels 91 418 - -
Glsi13g0789 723 Gene3D - 103 421 - -
Glsi13g0789 723 Gene3D Jelly Rolls 494 614 IPR014710 -
Glsi13g0789 723 SMART cnmp_10 496 627 IPR000595 -
Glsi13g0789 723 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Glsi13g0789 723 MobiDBLite consensus disorder prediction 704 723 - -
Glsi13g0789 723 ProSiteProfiles IQ motif profile. 632 661 IPR000048 GO:0005515
Glsi13g0789 723 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0789 723 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0789 723 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0789 723 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0789 723 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0789 723 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Glsi13g0789 723 Pfam Ion transport protein 99 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi13g0789 723 SUPERFAMILY cAMP-binding domain-like 425 615 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0789 Glsi-ChrGlsi13 26618682 26625626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0789 18 720 Ion Channels AT5G57940 80.878 0.0 1162