LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0787	ATGGTCGCGTTTCTGCAGCTAGTTTCAACCTCTGAAGCTCGAGACTTTTTGGTAGGAGGCACTGAACATTCCTGGACGCTTCCGCTTCCATCGGCAGACTCACTCAACCACTGGGCCCAGAATCACCGCTTCAGAATCGGCGATAATCTCTTATGGAAATACGACCAGAGATCGGAGTCTGTGCTGCAAGTGAAAGAGGAGGACTATAGAAGCTGCAATATCTCGGAGCCAATAGTAGAATACAACAATGGGGATACAAAGGTGGAGTTGAAACGGTCAGGGCCATTCTACTTCATAAGCGGAGCAGAGGGTGGTTGCCAGAAGGGATTAAAGGTAGCTGTGGTGGTTATGTCCGACAGCCACTGGGGAAGGCACCATTCTCCAGCGCCGGCTCCCTCTCCTTCACCTTCTGCAAGGCCACCGGAAAAAGGTGGAGCCGCCGGTTCATTAGGCGGTGGTACAGTGGAACCAATTGGAATGGGTTTGGGAGTTTCATTGCAATTAGCAAATATCATCGCACCTCCATTTTCCCACCACCCGTCACTCACAGTTACTCCAACTAGTTGCTCAGGACTGGTGATGCTTCTGAGCAATCCAGGAATGGATTGTGTTTCGATTAGTGTTTCTTGTGGGACTATGCTGCTTAGTAAAGGAATGACTTTAACCCCAAAAGAACCCTTCAGGGTTTCCTTAATGCTGAAGCCCAACTTATTATCAGGTCTTAGTTCACTTGATTCTTTGCAGTACAGTAGTAGTAAGATTAGACATTCTATGAAGATCAGAATTCCACCAAAGAAGTTTTGTCAAAACGCATTAACCATCAGAAATGAAATTCCTCAAAATGCTGATTTTCCTCGGCACATTTCAAGAAAGGAGAAAAAACCTTTTCCTACACCCATTGTAGAGCTGCGACGAAGAGCTAGGGAGAGGCTAAAGAAGAGGAAAGATCAACCAAGAAGATCACTGCCACCTCCAAAGAATGGGTTGACGGTGAAGAGCCTTATACCAACTGCTCATAATGTGTATAATGCAAGGATCACTTTGATTAACAATTTGAAGAAGCTGCTGAAAGTGGTGCCTGTGCACGCTTGTGGGTGGTGTAGTGAAATTCATGTAGGACCTGTTGGACATCCTTTCAAGTCATGTAAAGGCTCACATGCTAACATCCGCAAGGGCCTTCATGAATGGACAAATGCAGTTATTGAAGACATATTAGTACCAGTCGAAGCATATCACCTCTTTGATCGTCTTGGAAAGCGTATTTCTCATGAAGAGAGATTCTCTATCCCACGAATTCCAGCTGTGGTTGAGCTCTGCATTCAAGCTGGTGTTGAACTTCCTGAGTTTCCCACAAAAAGGAGAAGAAAGCCTATAATCCGCACTGGGAGGAAGGAATTCATTGATGCTGATGAAAGTGAACTACCAGATATAATCCCAGTGGATCCGGTGATTCCCTTATTAACTGAAATACCTGATTCAAAAATAGTAGCTCCATCTAATAAAGAAGACACAGTTCGCCTTGCTGAGGAAACACTCCAAGCATGGGAACAGATGAGGAATGGAACCAAAAGACTAATGCGGATGTACACGGTGAGGGTTTGTGGATATTGCCCTGAAATTCATGTGGGTCCCCAGGGTCACAAGGCACAAAACTGTGGAGCTCACAAACACCAACAACGCAATGGGCAGCATGGTTGGCAGGCTGCCGTGCTAGATGACTTGATACCTCCAAGGTTTGTGTGGCATGTCCCGGATGTAAACGGACCACCACTGGAGCGAGAGCTTAGGGATTTCTATGGGCAAGGCCCTGCTGTAGTGGAAATGTGCATTCAGGCTGGTGCTAATTTACCAGAACAGTACAAACCAACCATGAGGCTGGATGTGGGGATCCCATCGAATATTAAAGAAGCTGAAATGGTAGTTTGA	1926	0.4605	MVAFLQLVSTSEARDFLVGGTEHSWTLPLPSADSLNHWAQNHRFRIGDNLLWKYDQRSESVLQVKEEDYRSCNISEPIVEYNNGDTKVELKRSGPFYFISGAEGGCQKGLKVAVVVMSDSHWGRHHSPAPAPSPSPSARPPEKGGAAGSLGGGTVEPIGMGLGVSLQLANIIAPPFSHHPSLTVTPTSCSGLVMLLSNPGMDCVSISVSCGTMLLSKGMTLTPKEPFRVSLMLKPNLLSGLSSLDSLQYSSSKIRHSMKIRIPPKKFCQNALTIRNEIPQNADFPRHISRKEKKPFPTPIVELRRRARERLKKRKDQPRRSLPPPKNGLTVKSLIPTAHNVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGSHANIRKGLHEWTNAVIEDILVPVEAYHLFDRLGKRISHEERFSIPRIPAVVELCIQAGVELPEFPTKRRRKPIIRTGRKEFIDADESELPDIIPVDPVIPLLTEIPDSKIVAPSNKEDTVRLAEETLQAWEQMRNGTKRLMRMYTVRVCGYCPEIHVGPQGHKAQNCGAHKHQQRNGQHGWQAAVLDDLIPPRFVWHVPDVNGPPLERELRDFYGQGPAVVEMCIQAGANLPEQYKPTMRLDVGIPSNIKEAEMVV	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0787	641	ProSiteProfiles	Phytocyanin domain profile.	14	118	IPR003245	GO:0009055
	Glsi13g0787	641	PANTHER	BLUE COPPER PROTEIN	15	155	IPR039391	GO:0009055
	Glsi13g0787	641	CDD	OsENODL1_like	14	117	IPR041846	-
	Glsi13g0787	641	FunFam	Early nodulin-like protein 1	13	121	-	-
	Glsi13g0787	641	ProSiteProfiles	APO domain profile.	363	448	IPR023342	GO:0003723
	Glsi13g0787	641	ProSiteProfiles	APO domain profile.	533	618	IPR023342	GO:0003723
	Glsi13g0787	641	MobiDBLite	consensus disorder prediction	123	151	-	-
	Glsi13g0787	641	SUPERFAMILY	Cupredoxins	13	117	IPR008972	-
	Glsi13g0787	641	MobiDBLite	consensus disorder prediction	310	330	-	-
	Glsi13g0787	641	Pfam	Plastocyanin-like domain	30	109	IPR003245	GO:0009055
	Glsi13g0787	641	Pfam	APO RNA-binding	270	468	IPR023342	GO:0003723
	Glsi13g0787	641	Pfam	APO RNA-binding	503	619	IPR023342	GO:0003723
	Glsi13g0787	641	Gene3D	-	12	121	IPR008972	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0787	Glsi-ChrGlsi13	26604429	26612710	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0787	11	136	Phytocyanin Superfamily	AT4G30590	50.000	1.72e-38	139