Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0772 ATGGAGGCAAGTGCTGGACTAGTCGCAGGGTCTCACAACCGCAACGAGCTGGTGGTCATTCAGGGGCATGAAGAGCCCAAGGCATTGAAGAAGTTGGACGGTCAGGTGTGTGAAATATGTGGGGATGATGTGGGAGTGAATGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGCTTTCCGGTGTGCCGGCCTTGCTATGAGTATGAGAGGAGAGAAGGCACCCAACTTTGCCCTCAGTGCAGGACCAGATACAAGCGTCTCAAAGGGAGCCCGAGGGTGGAGGGAGACGATGACGAAGAAGACGTGGACGATATTGAACATGAATTTAACATGGAAGACCAAAAGAACAAGCACAACCAAATTGCAGAAGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGCCCTGACGATGATGACAATGCTCACTTCCCACCTGTTATATCCGGTGCTCGCTCTCGCCCAGTGAGTGGGGAGTTCCCAATAGCATCTCATAATTATGGAGAGCCAATGTTATCCTCTTCACAGCATAAACGAGTGCATCCATTTCCACTGTCTGAACCTGGGGATGAAAAGAAAGATGATGGTTATTGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCCGAACCCGATGAAGATCCAGATGCAGCCATCTTAGATGAAGCAAGGCAGCCACTGTCAAGGAAAGTGCCAATAGCATCGAGCAAAGTCAATCCATACAGGATGGTAATAGTGGCAAGGCTTGTGATTCTTGGCTTCTTCCTGCGATACAGAATTATGAACCCAGTTCATGACGCTATGGGTCTATGGCTTACCTCTATTATTTGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTCCCTAAATGGTTTCCTATTGATCGAGAGACCTATCTTGATCGCCTTTCAATCAGATACGAGCGGGAAGGCGAACCCAACATGCTGGCTCCTGTAGATGTGTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTCACTGCCAACACTGTACTTTCCATCTTGTCCATGGATTACCCTGTTGATAAAATCTCATGCTATATCTCTGATGATGGAGCTTCTATGTGTACGTTTGAAGCTCTCTCTGAAACTGCAGAGTTTGCTAGGAAGTGGGTTCCATTTTGCAAGAAATTTTCTATTGAACCTCGGGCACCGGAGATGTACTTCTCTGAGAAGATTGATTACCTCAAGGACAAAGTCCAACCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGGTCAATGCACTTGTGGCTAAAGCCCAGAAGGTTCCTCCAGGAGGTTGGATTATGCAGGATGGAACACCATGGCCAGGGAACAATACTAAGGATCATCCGGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGCTTCGATGCTGAAGGAAACGAGCTTCCTCGTCTTGTCTATGTCTCCCGAGAGAAAAGGCCTGGTTTTCAACACCACAAAAAAGCTGGTGCCATGAATGCTCTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGTTGAACTTGGACTGTGATCATTATGTCAATAATAGCAAGGCAGCCCGAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGAAAGAAGATTTGCTATGTGCAGTTTCCTCAGAGATTCGATGGCATTGACAGGCATGATCGTTATGCCAATAGGAACACAGTGTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCGGTATATGTGGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGCTATAGTCCTCCCAAGGGTCCTAAACGCCCAAAAATGGTAAGCTGTGATTGCTGCCCGTGTTTTGGACGCCGCAAGAAGCTTAAGTATGCAAAGGACGATGCAAATGGGGAGACTGCAAGGCTACAAGGGATGGATGATGACAAAGAGCTGCTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATATTTGTGACCTCAACTCTAATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCTGCAGCCCTGCTTAAAGAAGCCATTCATGTCATCAGTTGTGGCTATGAAGACAAAACTGAATGGGGAACCGAGCTAGGTTGGATCTATGGGTCTATCACAGAGGATATTCTGACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCTATTTACTGTATGCCAAAGAGATCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGATTGAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAGATCTTTTTCAGTAACCATTGTCCTCTATGGTATGGCTACAAGAAAGGGAACCTAAAGTGGCTCGAGCGATTTGCCTATGCCAACACAACAGTCTACCCTTTCACTTCTATTCCTTTGCTTGCTTACTGCATTCTTCCAGCCGTTTGCTTACTGACTGACAAATTCATCATGCCTCCGATAAGCACTTTTGCTGGTTTATACTTCATTGCACTTTTCTCTTCGATCATTGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAATTTTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTTATCCAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAACTTCACAGTTACATCAAAAGCAGCAGATGATGAGGACTTTGGGGAACTATACACCTTTAAATGGACCACTCTATTGATTCCTCCAACCACTATTTTAATCATCAATATTGTTGGGGTTGTTGCTGGGATCTCCGATGCCATAAACAATGGGTACCAATCCTGGGGACCACTATTTGGAAAGCTTTTCTTCTCCTTCTGGGTAATTGTCCATCTGTACCCATTCCTTAAAGGTCTGATGGGTCGGCAAAACCGAACACCCACCATTGTTGTGATTTGGTCAGTGCTATTAGCTTCTATTTTCTCCTTGCTTTGGGTGAGAATTGACCCATTTGTGATGAAAACCAAGGGACCTGATACCAAGCTATGTGGAATCAACTGCTGA 3111 0.4581 MEASAGLVAGSHNRNELVVIQGHEEPKALKKLDGQVCEICGDDVGVNVDGDLFVACNECGFPVCRPCYEYERREGTQLCPQCRTRYKRLKGSPRVEGDDDEEDVDDIEHEFNMEDQKNKHNQIAEAMLHGKMSYGRGPDDDDNAHFPPVISGARSRPVSGEFPIASHNYGEPMLSSSQHKRVHPFPLSEPGDEKKDDGYWKDRMDDWKLQQGNLGPEPDEDPDAAILDEARQPLSRKVPIASSKVNPYRMVIVARLVILGFFLRYRIMNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILSMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGFDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKICYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRKKLKYAKDDANGETARLQGMDDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRSAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPLWYGYKKGNLKWLERFAYANTTVYPFTSIPLLAYCILPAVCLLTDKFIMPPISTFAGLYFIALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKLCGINC 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0772 1036 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Glsi13g0772 1036 SUPERFAMILY Nucleotide-diphospho-sugar transferases 341 854 IPR029044 -
Glsi13g0772 1036 MobiDBLite consensus disorder prediction 136 200 - -
Glsi13g0772 1036 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 231 1003 - -
Glsi13g0772 1036 CDD mRING-HC-C4C4_CesA 35 85 - -
Glsi13g0772 1036 FunFam Cellulose synthase 19 110 - -
Glsi13g0772 1036 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Glsi13g0772 1036 Coils Coil 426 446 - -
Glsi13g0772 1036 SUPERFAMILY RING/U-box 22 109 - -
Glsi13g0772 1036 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 470 619 IPR029044 -
Glsi13g0772 1036 FunFam Cellulose synthase 445 619 - -
Glsi13g0772 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Glsi13g0772 1036 Pfam Cellulose synthase 328 1030 IPR005150 GO:0016020|GO:0016760|GO:0030244
Glsi13g0772 1036 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0772 Glsi-ChrGlsi13 26517051 26522782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0772 1 1036 Cell Wall Biosynthesis AT5G17420 85.149 0.0 1840