Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0747 ATGGCTCTCCATTGGGTTTTTCTCCTCTTCTTTCTCTCCAGTGCTGGACTTTGTTTCTCTTACGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGCATAAGAGAAGCTCTGAATGATCCACATGGGGTGTTAAGCAACTGGGATGAATACTCGGTGGACCCTTGCAGTTGGGCTATGATCACTTGCTCATCTGATTACCTTGTTATAGGCCTGGGAGCTCCAAGCCAATCTCTCTCTGGAACTTTATCTGGGGCAATAGGAAATCTGACAAATCTACGACAAGTGTTACTGCAGAATAACAATATCTCTGGCGAAATCCCACCGGAACTTGGGACCCTTCCCAAGCTACAAACTTTAGATCTTTCCAATAATCAATTCTCGGGGGTGATTCCAGGGTCTATAAGCCAGTTGGATAGTCTCCAGTACCTGAGGCTGAACAACAATAACCTATCTGGGCACTTTCCTGTGTCACTAGCCAAAATCCCACAGCTTGCTTTCCTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCCAGATCTTTCAATGTTATGGGAAACCCACTAATATGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGATCAGCAACCCTTGTGCCTGTTTCCTTCTCTCTGGCATCGTCACAAGGAAAACACAAGTCGAAGAGAATAGCAATTGCACTTGGGGTCAGCCTTAGCTGTGCTTGTGTCTTGCTCCTGTCTCTTGGTTTCTTGTGGTATAGAAGGAAAAGACTGCATGGGGCCATCCTGTACATCTATGATTATCAGGAAGATGGACTTGTTAGATTGGGAAATCTCAATATGTTCACTTTCAGAGAGCTCCAACATGTAACTGATAATTTCAGCTCCAAGAACATCCTTGGCGCTGGAGGTTTTGGCGATGTTTATAAAGGAAAGCTTGGAGATGGGACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGAAGTGCTGGGGATTCACAATTTCGAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTATATGTCTAATGGAAGTGTGGCCTCCAGGCTTAGAGGCAAACCTGCATTAGATTGGAACACAAGAAAGAGGATAGCGATTGGAGCTGCCAGAGGTCTTCTGTATCTACATGAGCAGTGTGATCCAAAGATAATACACAGAGATGTAAAGGCAGCTAATGTGCTTCTGGATGAGTATTGTGAAGCTGTTGTTGGTGACTTTGGCCTGGCAAAGCTCCTTGATCATGCTGACTCTCATGTCACCACTGCTGTCCGTGGCACTGTAGGTCACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTCGGATTTGGCATTCTCTTGTTGGAGCTTATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACAGTGAGTCAAAAAGGCGTGATGCTAGAGTGGGTAAAGAAAATACAGCAGGAAAAGAAGGTTGAAGTGTTGGTGGACAAAGAGTTAGGGAGTAACTGTGACCGGATAGAGGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAGTATTTGCCGGCACACCGCCCTAAAATGTCTGAAGTGGTCAGAATGCTTGAAGGTGATGGCCTTGCTGAGAAGTGGGCAGCATCACACAATCATGCCAGTCTCATCACGAACACCTTTCACAGCAACACTAGTACTAGTCCATCTTCTTCTCGCCCTACCACCACCACCGCTTCTAAACATGATGACAATGCTCATGATCGTTCCAGCATGCTTGGCATGGGAGTGGATGGTGATGACGATGAACATTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCAAGATAG 1926 0.4579 MALHWVFLLFFLSSAGLCFSYEPRNHEVEALMSIREALNDPHGVLSNWDEYSVDPCSWAMITCSSDYLVIGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGEIPPELGTLPKLQTLDLSNNQFSGVIPGSISQLDSLQYLRLNNNNLSGHFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARSFNVMGNPLICGSSSTEGCSGSATLVPVSFSLASSQGKHKSKRIAIALGVSLSCACVLLLSLGFLWYRRKRLHGAILYIYDYQEDGLVRLGNLNMFTFRELQHVTDNFSSKNILGAGGFGDVYKGKLGDGTMVAVKRLKDVTGSAGDSQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVSQKGVMLEWVKKIQQEKKVEVLVDKELGSNCDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHASLITNTFHSNTSTSPSSSRPTTTTASKHDDNAHDRSSMLGMGVDGDDDEHSLDSYAMELSGPR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0747 641 MobiDBLite consensus disorder prediction 584 603 - -
Glsi13g0747 641 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Glsi13g0747 641 SMART LRR_typ_2 90 112 IPR003591 -
Glsi13g0747 641 SMART LRR_typ_2 138 169 IPR003591 -
Glsi13g0747 641 SMART LRR_typ_2 114 137 IPR003591 -
Glsi13g0747 641 MobiDBLite consensus disorder prediction 604 632 - -
Glsi13g0747 641 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Glsi13g0747 641 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Glsi13g0747 641 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Glsi13g0747 641 Gene3D Transferase(Phosphotransferase) domain 1 370 581 - -
Glsi13g0747 641 MobiDBLite consensus disorder prediction 584 641 - -
Glsi13g0747 641 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Glsi13g0747 641 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Glsi13g0747 641 SUPERFAMILY L domain-like 25 189 - -
Glsi13g0747 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Glsi13g0747 641 PRINTS Leucine-rich repeat signature 117 130 - -
Glsi13g0747 641 PRINTS Leucine-rich repeat signature 162 175 - -
Glsi13g0747 641 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Glsi13g0747 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 573 - -
Glsi13g0747 641 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672|GO:0006468
Glsi13g0747 641 ProSiteProfiles Protein kinase domain profile. 293 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0747 641 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Glsi13g0747 641 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0747 641 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0747 Glsi-ChrGlsi13 26335641 26340682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0747 6 508 Receptor kinase-like Gene Family AT2G23950 76.342 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi13g0747 PK_Tyr_Ser-Thr 5.4e-42 CL0016