Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0729 ATGAGAAGAAAATTTCTGCAAGTTAAAGCAGAGGCCTTTTTGCCTCCCTTACAACGACCACTATATCTTCTTTCTCAGCCAAACCCACCTTCACCGCCCAATGTTCGATCTGGTAATTTCAATATGAACGACAAGGTCAGTCCAAGTATACTCCTTGTCATCATCATTCTGGCTATTGTTTTCTTCCTTTCTGGGTTGCTCCACCTCCTCGTTCGATTTCTATGGAGGCCTCAAAGCAGAGACCCAGATGATTTGGATAATGTGACCGCTCTTCAAGGACAATTGCAGCAACTCTTCCACCTCCACGATGCTGGGGTTGACCAGTCCTTCATAGACACCCTCCCTGTCTTCCATTACAAAGCCATTATAGGATTGAAGAACCCATTTGATTGCGCTGTGTGTTTGTGTGAATTTGAACCAGAGGACCAGCTCAGATTGTTGCCAAAATGCAGCCATGCCTTTCACATGGAGTGTATAGACACTTGGCTCATGTCTCACTCTACTTGCCCTATCTGTAGAGCTAGCTTGCTCCCTGATTTCTCTTCAAACAGCACCCGTTCTCCCGTTGTTCTTGTTCTAGAATCTGGGAGTGAGAGTTCGAGAGAGATCGTTCCAGAAAGAGAGGACCAATTCGGGTCAGCGCGTTTTGATTTATCTAACAAATCGGGTGACTTGACTTCAATCGAGAACCCTGGTCCAACCATGGTGGGGGAATCAGGAGAACAAGTGGTTACTGTGAAACTGGGAAAGTTCAGGAATGCGGATGGTGGTGAAGGAAGTAGTAATAGTAACAACGATGCAGATGCAAGAAGGTGCTTCTCTATGGGAGCATTTGCTTATGTTATGGACGAGAATTCTTCGCTTCAGGTACCCATAAGAACTCCAATCAAGAAGCCGTCAAGCAAGAAGCCTGCTTTTTTACCATTAACGCCAGGACAGAGACCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGAGATTTCAAATTCTCAAGCTTTGACGCAAATAGAGTTGACGGCATTTCTGGGATTTCAAGTTCTGGTAAGGGCACTGGCAGTGGGAGGAATATTAGCAGAAAAGAGAGCTATTCAATATCAAAGATTTGGCTCCGGGAGAAGAGGGATAAGCCAAATACACTGGCGGATTCGTCCAGAAGGGCTGTTTCATTCCGATTTCCAATGCAGCGCAATGATTTTAAGGCCAAGAATAGTGGGAAATTTGAGACAAGAAGTGCTATTTCTGAGATGGAAATTGGGAAATGGGAAAATGGAGGAAGCGAATTCGGGTTTGAAGACGAAAACCAGAGCTGTCACAGTGTAGATTCTCAGGCAAGAGCGCCCTCTTTTGCAAGAAGGACTCTGCTTTGGCTCACGGGAAGACAAAACAAAGTTGTTCACTCATCCTCTCCTTCCAACAATTTCTAG 1425 0.4519 MRRKFLQVKAEAFLPPLQRPLYLLSQPNPPSPPNVRSGNFNMNDKVSPSILLVIIILAIVFFLSGLLHLLVRFLWRPQSRDPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDQLRLLPKCSHAFHMECIDTWLMSHSTCPICRASLLPDFSSNSTRSPVVLVLESGSESSREIVPEREDQFGSARFDLSNKSGDLTSIENPGPTMVGESGEQVVTVKLGKFRNADGGEGSSNSNNDADARRCFSMGAFAYVMDENSSLQVPIRTPIKKPSSKKPAFLPLTPGQRPAMSECDCESRRDFKFSSFDANRVDGISGISSSGKGTGSGRNISRKESYSISKIWLREKRDKPNTLADSSRRAVSFRFPMQRNDFKAKNSGKFETRSAISEMEIGKWENGGSEFGFEDENQSCHSVDSQARAPSFARRTLLWLTGRQNKVVHSSSPSNNF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0729 474 CDD RING-H2_EL5-like 130 173 - -
Glsi13g0729 474 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Glsi13g0729 474 MobiDBLite consensus disorder prediction 294 320 - -
Glsi13g0729 474 SUPERFAMILY RING/U-box 110 182 - -
Glsi13g0729 474 Pfam Ring finger domain 130 173 IPR001841 -
Glsi13g0729 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 178 IPR013083 -
Glsi13g0729 474 FunFam RING-H2 finger protein ATL46 93 178 - -
Glsi13g0729 474 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 369 - -
Glsi13g0729 474 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0729 Glsi-ChrGlsi13 26185076 26186500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0729 41 469 C3H Transcription Factor Family AT2G18650 45.197 4.27e-99 302