Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0728 ATGGGGCTTGTCATCATCACGAGCCTTGCCTCACTTGCTTCTGCTGCACAATCTGGAACTGCCACTTTTTACACTACATACGTTCCATCTGCGTGCTATGGGTTCCAAAACCAGGGAACGCTGATAGCGGCAGCAGGCGACGCACTCTGGAACAACGGAGCCGCATGTGGTAAATTTTATAAAGTGAGATGCACCGGCCCCACCAACCAAGGAGTGCCTCGGCCATGCAGGGGCAACGGAGTCACCGTCAAGATTGTCGATCGTTGCCCTTCCCCAGGATGCCAAGCAACCATCGATCTCTCTAAGGAAGCTTTCTCTGCAATTGCTAACCCTGATGCTGGCAAAATAAAAATTGAGTACACCCATGAAATGGCAAGCAAAATGACCGTCGTGCTTGTTATGGGGCTTGTCGTCACAAGCCTTGTCTCAATTGCATCTGCAACGAGTGGAACTGCCACTTTTTATACTACATACGTTCCATCAGCGTGCTATGGGTCCGAAAACCACGGAACGATGATTGCAGCTGCAAGCGACAAAGTCTGGAACAACAGAGCTGCATGTGGTAAAAAGTATACAGTGAAATGCACCGGCGGCACCAACCAGGGGATACCTCATCCGTGCCGGGGTAAAAGTGTCACTGTAAAGATTGTTGATTACTGCCCTACCCAAAAAGGATGCAAAGCAACCCTTGATCTCTCTAAGGAAGCTTTCTCTGCAATTGCTAACCCTGATGCTGGCAAAATCAACATTGAGTACCACCCTTGCTTAGAAGGGGTTGCAACCAACTATTCACCTCTCTACGTTCCCTCAGCATCCCATGGATATAAAGAAATGGAGGATTATTTGGTGGCTGGAGTAGGGAAAGCATTGTGGAATAATGGAAAAGCTTGTGGGGAACTTTATAAAGTGAGATGCGTTGGGGCCGTACACCTCACAGCACCACAACCTTGTATCCATGTCGGAACCGGTGTAGACGTTGTTGCAGTGAGGATCGTAGATTACTGTCCGAGGTGCCCTGGAGTCATATATAAACCTTTCACAAGACGCTTTTGCTGTTATTGCCGATCTTCGCGCAGGTGTCATCAAGATTGA 1092 0.4863 MGLVIITSLASLASAAQSGTATFYTTYVPSACYGFQNQGTLIAAAGDALWNNGAACGKFYKVRCTGPTNQGVPRPCRGNGVTVKIVDRCPSPGCQATIDLSKEAFSAIANPDAGKIKIEYTHEMASKMTVVLVMGLVVTSLVSIASATSGTATFYTTYVPSACYGSENHGTMIAAASDKVWNNRAACGKKYTVKCTGGTNQGIPHPCRGKSVTVKIVDYCPTQKGCKATLDLSKEAFSAIANPDAGKINIEYHPCLEGVATNYSPLYVPSASHGYKEMEDYLVAGVGKALWNNGKACGELYKVRCVGAVHLTAPQPCIHVGTGVDVVAVRIVDYCPRCPGVIYKPFTRRFCCYCRSSRRCHQD 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0728 363 SUPERFAMILY Barwin-like endoglucanases 9 121 IPR036908 -
Glsi13g0728 363 Gene3D - 256 350 IPR036908 -
Glsi13g0728 363 Gene3D - 146 254 IPR036908 -
Glsi13g0728 363 FunFam Barwin-related endoglucanase 16 122 - -
Glsi13g0728 363 SMART dpbb_1 173 252 IPR007112 -
Glsi13g0728 363 SMART dpbb_1 42 120 IPR007112 -
Glsi13g0728 363 CDD DPBB_EG45-like 148 253 - -
Glsi13g0728 363 CDD DPBB_EG45-like 18 121 - -
Glsi13g0728 363 SUPERFAMILY Barwin-like endoglucanases 137 254 IPR036908 -
Glsi13g0728 363 FunFam Barwin-related endoglucanase 147 254 - -
Glsi13g0728 363 Pfam Lytic transglycolase 44 120 IPR009009 -
Glsi13g0728 363 Pfam Lytic transglycolase 287 340 IPR009009 -
Glsi13g0728 363 Pfam Lytic transglycolase 174 252 IPR009009 -
Glsi13g0728 363 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 19 120 IPR007112 -
Glsi13g0728 363 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 258 363 IPR007112 -
Glsi13g0728 363 CDD DPBB_EG45-like 258 350 - -
Glsi13g0728 363 Gene3D - 5 122 IPR036908 -
Glsi13g0728 363 SUPERFAMILY Barwin-like endoglucanases 256 340 IPR036908 -
Glsi13g0728 363 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 150 252 IPR007112 -
Glsi13g0728 363 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 257 342 IPR044206 GO:0009627|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0728 Glsi-ChrGlsi13 26170085 26177836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0728 41 120 Expansin Gene Family AT2G45110 36.667 3.86e-08 52.0