Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0727 ATGCCTCCTCCTATTCCCCACCACCACCATGCCTCCGCCGATCTTCAATCCCAACCAAAGCCCAGCTCCAAACTCCTTTCCTTCCTTCTTAAAGTCATCATTATGACCCTTCTTACCTCCCTTTTCTCCCTTTTTCTCGGCTTCGCTGCCTTTGTCCTCCTTCACCTCTGCTTCGTCGGCAGTGTCCTCCACCGCCTTCGCTCCCGCCCCACCATCCAACTTAGAACTTCCTCTAATGGGATCGCGCCTCATGATGTAAAGAAGCTTCCCCACTTCCGGGTTTCCAAGGGGACGGAACCCGTATCCGAAACCCAATGTGTCGTCTGCTTGGATGGCTTCCGGAACGGCCACTGGTGCAGAAAGCTCGCGGGATGTGGTCACGTTTTCCACAGGAGATGTGTGGATACGTGGTTGGTCAAGGTGGCTGCATGTCCTACCTGCAGGACTCCTGTTCGGTTAAATGCCGGGGCTTTAAGTTCGGCTCTAACTATCGAAACAGAGGAGGCTAAGCAATTTTCGAGGTGCGATAGTAGCAGTGCTTTGAGGATATTTTAG 555 0.5297 MPPPIPHHHHASADLQSQPKPSSKLLSFLLKVIIMTLLTSLFSLFLGFAAFVLLHLCFVGSVLHRLRSRPTIQLRTSSNGIAPHDVKKLPHFRVSKGTEPVSETQCVVCLDGFRNGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLNAGALSSALTIETEEAKQFSRCDSSSALRIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0727 184 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g0727 184 SMART ring_2 106 147 IPR001841 -
Glsi13g0727 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 155 IPR013083 -
Glsi13g0727 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 169 - -
Glsi13g0727 184 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Glsi13g0727 184 Pfam Ring finger domain 105 148 IPR001841 -
Glsi13g0727 184 SUPERFAMILY RING/U-box 100 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0727 Glsi-ChrGlsi13 26166694 26167248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0727 20 153 C3H Transcription Factor Family AT2G18670 46.667 1.53e-31 110