Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0725 ATGCTTTCGCGATCTTGCTTAGACTTATTGAATTTGGTTTCCGTCGATGATTACCGGACTCTGAGTCGGGTTCCGAGGGTCATCTCGGTCCCCGGTGTTATATCAAAATACAAAGTCGACGAAGATGACCGGGACAATTCCGTGTCAGGATCCGATGACGTAGTTTCCTCTGTTCCGCAAGAACGCAGAATCATCGTCGCCAACCAGTTGCCTATACGGGCTTTTCGCGATGCAGAGACCAAGAAATGGAGTTTCGAACTCGACAGTGATAGTTTGGTACTGCAGCTCAAGGACGGGTTCCCCTCCGACGTGGAAGTTCTCTATGTGGGTTCCCTAAACGTCGACATCGATGTGTCGGAACAGGACGAAGTGGCGCAACTCTTGCTCGATAAGTTTCGCTGCGTGCCAACCTTCTTGCCCGCCGAGATTCAGAACAAGTTCTACCATGGATTCTGCAAGCATTACCTCTGGCCCCTCTTCCACTACATGTTGCCGATGTCGCCGAGTCACGGTGCGCGTTTTGACCGCGCACAGTGGCGAGCTTATGTTTTGGCCAACAGGATTTTCGCCGAAAAGGTAACAGAGGTGATAAACCCAGATGAAGATTTCGTTTGGGTCCACGATTATCATCTAATGATCTTGCCTACCCTACTGAGGAAACGGTTCCACCGGGTCAAGCTCGGTTTCTTTCTGCATAGCACATTTCCTTCCTCAGAAATCTTCAGAACTATACCTGTTCGCGATGATATCCTTCGGGCCTTTTTGAATTGTGATTTAGTCGGATTTCAGACATTCGATTACGCCAGGCATTTTTTGTCTTGTTGTAGTAGGATGCTGGGTCTTGATTATGAGTCTAAGAGGGGCTACATTGGACTAGATTATTACGGTCGAACCGTGACGATTAAGATCCTGCCTGTCGGGATTCACATGGGTCAGCTTGAATCAGTTTTATCCTTGTCTCAGACGGCTGAGAGGATTAAGGAATTAAAGAAGCAATTTGAGGGAAAAATTGTGATATTGGGCGTGGATGACATGGATTTGTTCAAAGGTATCAGCTTGAAATTCTTAGCAATGGGGCAACTTTTGGAAGTGCACGAAGAGTTAAGGGGTCGAGTGGTTTTAATTCAGATTCTGAACCCTGCAAGGAGCAGAGGTAAAGATATTCAGGATGTTCAGAACGAGACCAATTCTATTGCAGAGGAGATCAACGGAAAATACAGCAAACGAGGGTATCAGCCAATCATCTTCATCAATGGGCCAGTCTCAACCCAAGAGAAAGCCGCCTACTTTGCCATTTCTGAGTGCTGCGTTGTGAATGCTGTGAGAGATGGTATGAACTTAGTCCCTTATATGTACACTGTTTGTAGACAGGGGAGCCTTGTCCTGGACAAGGGTCTCGGAATTGACGATGAATCAGCAAAAAGGCCTAAAAATAGCGTTATCATAGTGTCGGAATTCATCGGGTGCTCGCCGTCTCTTAGCGGAGCCATCCGAGTGAATCCATGGAACATCGAAGATGTCTCTGAGGCCATGAATTTGGCTATAACCATGCCAGAGGCAGAGAAGCAACTCCGTCATGAGAAAAATTATAAGTACATAAGCTCGCATGACGTAGCATATTGGGCTCGGAGTTTTGATCAGGACTTAGAAAGAGCTTGTAGAGAGCATTACCTCAAGAGGTGTTGGGGGGTTGGTTTGGGCTTGGGGTTCAGAATTGTTGCTCTTGATCCTACATTTAGGAAGCTGTCAGTGGACAACATTGCCTCTGCGTATAGACATACACAGAGCAGGTTGATCCTTTTGGACTATGATGGTACTATGATGCCACAGGCCTCAGTCGACAAAGCTCCAAGCAGTGAAGTTATTTCTGTGTTGGATTGTTTATGTAGTGATCCCAGAAACATAGTATTTATTGTCAGTGGAAGAGACAAGAATTGCCTGAGCAATTGGTTTTCTCCATGCCAGAAGTTGGGTCTCTCGGCAGAGCATGGTTACTTTATTAGGTGGAGTGGGGATTCTCCATGGGAGACTTGTGGATTGACAATGGATTTTGATTGGAAAAAGATTGCAGAACCCGTGATGGCACTTTATACAGAAGCAACTGATGGTTCTTTCATTGAACAGAAGGAAAGCGCACTGGTGTGGCAGCATCAAGAAGCTGACCCTCATTTTGGATCATGCCAAGCTAAAGAACTTCTTGATCACCTCGAGAATGTGCTTGCTAACGAGCCAGTAGTAGTCAGAAGAGGACAACATATCGTTGAAGTAAAACCTCAGGGTGTGAGCAAAGGAATAGTTGTGGAAAACCTCATATCAACAATGGTAAGTGAGGGGAAGGCACCAGATTTTGTGCTGTGCATAGGAGATGATAGGTCAGATGAAGATATGTTTGAGAGCATTGCTCGTTCAGTTTCTAATCCAACCCTACCAACGATAGCAGAAGTGTATGCATGCACTGTTGGTCAGAAGCCAAGTATGGCAAAATACTATCTGGATGATACTTTTGAAGTCGTCAAGTTGCTCCAAGGACTCGCCACAGCAGCATCAGCACCACCAAAGTCCATACATTCTCAGGGACTGCCAGGATCTCTATAG 2595 0.4605 MLSRSCLDLLNLVSVDDYRTLSRVPRVISVPGVISKYKVDEDDRDNSVSGSDDVVSSVPQERRIIVANQLPIRAFRDAETKKWSFELDSDSLVLQLKDGFPSDVEVLYVGSLNVDIDVSEQDEVAQLLLDKFRCVPTFLPAEIQNKFYHGFCKHYLWPLFHYMLPMSPSHGARFDRAQWRAYVLANRIFAEKVTEVINPDEDFVWVHDYHLMILPTLLRKRFHRVKLGFFLHSTFPSSEIFRTIPVRDDILRAFLNCDLVGFQTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLESVLSLSQTAERIKELKKQFEGKIVILGVDDMDLFKGISLKFLAMGQLLEVHEELRGRVVLIQILNPARSRGKDIQDVQNETNSIAEEINGKYSKRGYQPIIFINGPVSTQEKAAYFAISECCVVNAVRDGMNLVPYMYTVCRQGSLVLDKGLGIDDESAKRPKNSVIIVSEFIGCSPSLSGAIRVNPWNIEDVSEAMNLAITMPEAEKQLRHEKNYKYISSHDVAYWARSFDQDLERACREHYLKRCWGVGLGLGFRIVALDPTFRKLSVDNIASAYRHTQSRLILLDYDGTMMPQASVDKAPSSEVISVLDCLCSDPRNIVFIVSGRDKNCLSNWFSPCQKLGLSAEHGYFIRWSGDSPWETCGLTMDFDWKKIAEPVMALYTEATDGSFIEQKESALVWQHQEADPHFGSCQAKELLDHLENVLANEPVVVRRGQHIVEVKPQGVSKGIVVENLISTMVSEGKAPDFVLCIGDDRSDEDMFESIARSVSNPTLPTIAEVYACTVGQKPSMAKYYLDDTFEVVKLLQGLATAASAPPKSIHSQGLPGSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0725 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 554 - -
Glsi13g0725 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 55 314 - -
Glsi13g0725 864 Gene3D - 726 856 IPR023214 -
Glsi13g0725 864 Gene3D - 596 712 IPR023214 -
Glsi13g0725 864 CDD GT20_TPS 62 550 IPR001830 GO:0003824|GO:0005992
Glsi13g0725 864 Pfam Glycosyltransferase family 20 62 550 IPR001830 GO:0003824|GO:0005992
Glsi13g0725 864 NCBIfam trehalose-phosphatase 596 845 IPR003337 GO:0003824|GO:0005992
Glsi13g0725 864 Gene3D Glycogen Phosphorylase B; 55 314 - -
Glsi13g0725 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 713 - -
Glsi13g0725 864 SUPERFAMILY HAD-like 597 845 IPR036412 -
Glsi13g0725 864 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 726 858 - -
Glsi13g0725 864 CDD HAD_TPP 598 839 - -
Glsi13g0725 864 FunFam Alpha,alpha-trehalose-phosphate synthase 316 534 - -
Glsi13g0725 864 Pfam Trehalose-phosphatase 600 833 IPR003337 GO:0003824|GO:0005992
Glsi13g0725 864 Gene3D Glycogen Phosphorylase B; 315 534 - -
Glsi13g0725 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 846 IPR001830 GO:0003824|GO:0005992
Glsi13g0725 864 NCBIfam HAD-IIB family hydrolase 598 802 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0725 Glsi-ChrGlsi13 26139305 26142110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0725 1 858 Trehalose Biosynthesis Gene Families AT2G18700 65.814 0.0 1186