Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0724 ATGCTACTTTCTTTCATAGGTTCATTCAAAAGAATCCATACTTTAGAAATCTACAGATTAGCTGATTCTTCTAACAAGAAGATTTCTCGACTTGACAATGATCAAAATGGGTTTGTGTACCAGACCAGATTGATTCGAGCTGCCTTATCCTTAATTTATCTCCCATCCGAGCTTATCTACCTCAATTTATCTGGGAAACGTTTAGAGAGAAGAATCTCAATTCCCAATAGGTTTTCGGGGATGGAGGTTCTCGATTGGTACATTTTCAAGACACTCACAGTGAACAATCCCCAGATTATTGGACCTCCGATTCACTCGCATCTGCATCCAACGCCACCCCAACTTCAGTTTCACACTCCCACTCTGTCTTCCCTCTCCGATTCTCTGATCTCAGCTCTGGAAGCAAATGGAGTAAAGGGTATCAATGTTATTAGGGTTTTAGAGGATCTGAGATTTCGGGTTTCTCTTTCCCATGGAATTCAAGAAAGGGAAGCTTATTCCATGACTAAGATGAGGTTCTACTCGCCTGGCAAAAATCATAAGGAACCACTATGGGGAGGAACTCAACCATCAGCACTGGAAAGGTCATCATCTGCATACAAGGTTTCTTCGACTTCCTTGCTTAAGCAAAACAATGCACTGCCGTGGGGAAAAAATAGATTGGCTGAAACATTTAGAGTTGGGGGATCTAAGGTATTCCCAGAGGACCATGAGCCATGGCGCAAAAGGATACTGGACCCAGGTAGTGAGATTGTATTAAAATGGAACCGGGTCTTTATAGTTTCGTGCTTGGTGGCACTTTTTGTCGACCCATTGTACTTTTACTTACCCAGCGTGAGAGGAAATACAGGGTCTCCATGTGTGAGGACGGACCTAAACTTAAGGATTGTTGTGACCTTTTTACGGACTATTGCGGACATTTTTTATCTGTTGCATTTGATAATTAAGTTTCGGACAGCATATGTGGCACCGAGCTCACGGGTATTTGGCAGGGGTGAACTTGTCATGAATCCAAAGAAAATTGCACGAAGATACATCAGATCTGATTTCTTCATTGATTTTATTGCCACCCTGCCTCTTCCACAGATGGTCATTTGGTTCATTATACCAGCAACAAGAAGCTCTCAAACTGATCACACGAATAATGCTCTTGCATTGATTGTTCTGCTCCAATATGTTCCAAGATTATATTTGATCTTTCCACTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCCTGGGCAGGAGCTGCATATAATCTGCTATTGTATATGTTGGCTAGTCATGTTTTAGGGGCAGCATGGTATCTTCTATCTGTGGACCGGTATACCTCATGTTGGAAATCCTTTTGTAAAAAGGAATCTAGCCCTGAAAATTGCTCTCGTCACCTGGATTGCAGTTCTTTTAACCTTGAGCAACGCAGGATATGGGCAAATATTACAAGTGTGTTTAACAGCTGTGATCCCAGTAAAGATATAGATTTCAAGTATGGCATATTTGAAAGTGCAGTGAAAAAACATGTTGTCTCCTCAAATTTCATCTCAAAGTACTTCTATTGTTTATGGTGGGGTTTGCAGCAACTAAGTTCTTATGGGCAGAACTTGTCTACGAGCACTTTTATTGGAGAGACGTCATTTGCTATTCTGATTGCTATCTTGGGTCTTGTGTTGTTTTCCCATTTAATTGGGAACATGCAGACATATTTGCAATCAATCACCATAAGGCTTGAGGAGTGGAGGCTTAAAAGAAGAGACACTGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAAACAACTTGTTCGACGATTTGTTCAGTATAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAAGCAATTCTACATGGATTACCTGCTGATCTGCGCCGTGATATCCAACGCCACCTATGCTTAGACCTTGTTCGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTACTAGATGCAATATGTGAGCGGCTGGTATCCTCTTTGAGCACTCAAGGAACCTACATTGTTCGTGAGGGTGACCCTGTCACGGAAATGCTCTTTATTATCAGGGGTAGACTGGATAGTTCTACTACAAATGGTGGCCGAACTGATTTCTTCAACTCAATCATATTAAGACCTGGAGATTTTTGTGGTGAGGAACTACTTGCTTGGGCTTTGCTCCCAAAATCAACCATGAACTTGCCTTCTTCAACTAGGACAGTTAAATCTCTTAGTGAGGTTGAAGCTTTTGCTCTTCGAGCTGAAGACCTCAAGTTTGTAGCTAATCAATTTAGGCGCCTCCACAGCAAGAAGCTACAACACACCTTCCGGTTTTATTCCCACCATTGGAGGACTTGGGCGGCCTGCTTCATACAGGCTGCTTGGCGTAGATATAAGAAAAGGATGGCTGCCAAAGATCTCACTCTGAGGGAATCCCTTGCTTTGGATGAGACTCTGGCCAGTGAGAGAGAAGACGGGGATGAATATCCTGCTGGTTCAAATTCTTCTCAGGCTAAATTGAACCTCGGGGTCACAATATTTGCTTCAAGGTTCGCTGCAAACACAAGAAGAGGAGCTCTGAAGATTAAAGATGACCTGCCAAAATTACGTAAACCGGAAGAACCTGACTTTTCTACTGAAGCTGATGATGACTAG 2667 0.4263 MLLSFIGSFKRIHTLEIYRLADSSNKKISRLDNDQNGFVYQTRLIRAALSLIYLPSELIYLNLSGKRLERRISIPNRFSGMEVLDWYIFKTLTVNNPQIIGPPIHSHLHPTPPQLQFHTPTLSSLSDSLISALEANGVKGINVIRVLEDLRFRVSLSHGIQEREAYSMTKMRFYSPGKNHKEPLWGGTQPSALERSSSAYKVSSTSLLKQNNALPWGKNRLAETFRVGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVRGNTGSPCVRTDLNLRIVVTFLRTIADIFYLLHLIIKFRTAYVAPSSRVFGRGELVMNPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSSQTDHTNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTSCWKSFCKKESSPENCSRHLDCSSFNLEQRRIWANITSVFNSCDPSKDIDFKYGIFESAVKKHVVSSNFISKYFYCLWWGLQQLSSYGQNLSTSTFIGETSFAILIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLKQLVRRFVQYKWLATRGVDEEAILHGLPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTDFFNSIILRPGDFCGEELLAWALLPKSTMNLPSSTRTVKSLSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMAAKDLTLRESLALDETLASEREDGDEYPAGSNSSQAKLNLGVTIFASRFAANTRRGALKIKDDLPKLRKPEEPDFSTEADDD 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0724 888 FunFam Cyclic nucleotide-gated ion channel 1 579 643 - -
Glsi13g0724 888 Gene3D Jelly Rolls 650 770 IPR014710 -
Glsi13g0724 888 MobiDBLite consensus disorder prediction 869 888 - -
Glsi13g0724 888 Gene3D Helix hairpin bin 580 643 - -
Glsi13g0724 888 SMART cnmp_10 652 783 IPR000595 -
Glsi13g0724 888 Gene3D - 259 577 - -
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 615 622 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 521 538 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 547 558 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 430 440 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 PRINTS EAG/ELK/ERG potassium channel family signature 565 574 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0724 888 Pfam Cyclic nucleotide-binding domain 675 763 IPR000595 -
Glsi13g0724 888 FunFam Cyclic nucleotide-gated ion channel 1 650 768 - -
Glsi13g0724 888 SUPERFAMILY cAMP-binding domain-like 582 774 IPR018490 -
Glsi13g0724 888 CDD CAP_ED 652 783 IPR000595 -
Glsi13g0724 888 ProSiteProfiles cAMP/cGMP binding motif profile. 652 735 IPR000595 -
Glsi13g0724 888 Pfam Ion transport protein 255 578 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi13g0724 888 SUPERFAMILY Voltage-gated potassium channels 249 574 - -
Glsi13g0724 888 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 236 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0724 Glsi-ChrGlsi13 26128798 26139270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0724 171 887 Ion Channels AT4G30360 70.028 0.0 1026