Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0712 ATGTTCGTTCAATTCGTCAATGTTCTTCGCTTCTCCCTCACGTTCACAATAGCTGAAGAAGGAGGAAGATTTCTCTTTCCCCACTTCGTGGATGCACAACTCAGTTCTACTAATAAGACCCAGTTCGTCCAGCTTACTGGCTTCGTCATTGACGTTTTCAATGCCACAGTCTCTCATCTGGAGAGTTTAGGTTACAACATTTCCTTTGAGTTTAGACCTTTCGTAACGGAAGCTGGAAACAGTGCTGGAAATTACGACAGACTGCTCGACCAGATTCGTGCACAAAAGTACGATGCTGTGGTGGGAGATATCACGATTGTGGCATACCGATCAGAATATGTAGATTTTACACTACCATTTACGGAGTCTGGAGTGAGGATGCTCGTAAAATTTGGAGCAGCTAATGATGCAGTTTCTGTTAGTGGTGGGTTCGTGGATGCACAACTCCGTTCTACTAATAAGACCCAGTTCGTCCAGCTAACTGGCTTCGTCATTGACGTTTTCAATGCTACAGTGCTGGGAACAGTGCTGGGAATTACGACAGACTCCTCGACCAGAGTGTACGATGCTGTAGTTGGAGACATAACAATTGTAGCTAATCGCGCCAATAATGTTGATTTTACCTTGCCATATTTAGAATCAGAGGTGAAAATGGTGGTTTCCATGAAACACGATGAGAGACGAAATATGTGGATCTTCTTAAAGCCTTTGAGTTTGGGGCTTTGGTTGTCCACTGGTGCAGCCTTTGTCCTCACAGGTTTCATTATATGGCTTCTTGAACAGCGTACAAACACCGAGTTTCAGGGCTCCCCACAGCAACAAGTTAGCATGATGTTCTGGTTTTCCTTCTCCACACTAGTCTTTGCTCACAAGGAGAGACTAGAGAACCAGTGGTCACGTTTTGTGCTGATTATATGGATATTTGTGGTTCTTATCTTAACACAAAGTTACACTGCGAGTTTGGCTTCAATGTTAACGGTACGAAGATTGCGACCAACATTCATAGATTTAGAAGAGATAAAAACAAACAACTACTGCGTGGGATATAAGAAGGGTTCCTTTATCAAAACGCTTCTAACAGAACATTTGGGATTCAACGAGTCCAAGTTAAAGCCTTATCAGACTCCTGAAGAATTTCATCGGGCACTGTCAAATGGTGAGGTCGCTGCTATCATTGATGAAATCCCCTATATCAAGCTCTTCCTCAAAACATATGGCTCTAGCTATTCCACAGTTGGACCTACCTACAAAACCGGCGGATTCGGCTTTGCATTTCCACTAAAATCTCCGCTGGTGTCCTACTTTTCGAGGGCAATCCTGAATGTCACCGAAGATAAGGATAAATTTGAAGGGATTCAGAACAAGTACTTCTCTAGCGGAATTATATTTGACGATCGAAGTGCTTCAATCACTTCAGACAGTCCAATTCTTACTGTGTACAGTTTCGCAGGCCTTTTCATCATCACAGGGGTCACTTCAGGGCTTTCCCTCTTCTTATATTTGTTTAAATTCACATATTCTCATAGGTCTATTTTGAGGAGCATTCATTCACGAGAACCCGCCTTCTTGTCAGTGCTGGTTCAAATGGCAAAGCTTTTCAATAAAAAAGATAGCTCTTCCTCTTTATCTCCAAGCAGAAGTGAATCCAGAGTACACCCTACAACGTAG 1668 0.4287 MFVQFVNVLRFSLTFTIAEEGGRFLFPHFVDAQLSSTNKTQFVQLTGFVIDVFNATVSHLESLGYNISFEFRPFVTEAGNSAGNYDRLLDQIRAQKYDAVVGDITIVAYRSEYVDFTLPFTESGVRMLVKFGAANDAVSVSGGFVDAQLRSTNKTQFVQLTGFVIDVFNATVLGTVLGITTDSSTRVYDAVVGDITIVANRANNVDFTLPYLESEVKMVVSMKHDERRNMWIFLKPLSLGLWLSTGAAFVLTGFIIWLLEQRTNTEFQGSPQQQVSMMFWFSFSTLVFAHKERLENQWSRFVLIIWIFVVLILTQSYTASLASMLTVRRLRPTFIDLEEIKTNNYCVGYKKGSFIKTLLTEHLGFNESKLKPYQTPEEFHRALSNGEVAAIIDEIPYIKLFLKTYGSSYSTVGPTYKTGGFGFAFPLKSPLVSYFSRAILNVTEDKDKFEGIQNKYFSSGIIFDDRSASITSDSPILTVYSFAGLFIITGVTSGLSLFLYLFKFTYSHRSILRSIHSREPAFLSVLVQMAKLFNKKDSSSSLSPSRSESRVHPTT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0712 555 Pfam Ligand-gated ion channel 459 491 IPR001320 GO:0015276|GO:0016020
Glsi13g0712 555 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 133 IPR015683 -
Glsi13g0712 555 Pfam Bacterial extracellular solute-binding proteins, family 3 185 458 IPR001638 -
Glsi13g0712 555 Gene3D - 24 141 - -
Glsi13g0712 555 Pfam Ligated ion channel L-glutamate- and glycine-binding site 37 130 IPR019594 GO:0004970|GO:0016020
Glsi13g0712 555 FunFam Glutamate receptor 230 360 - -
Glsi13g0712 555 SUPERFAMILY Periplasmic binding protein-like II 159 459 - -
Glsi13g0712 555 SUPERFAMILY Periplasmic binding protein-like II 44 137 - -
Glsi13g0712 555 SMART GluR_14 148 459 IPR001320 GO:0015276|GO:0016020
Glsi13g0712 555 Gene3D - 231 363 - -
Glsi13g0712 555 Gene3D - 144 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0712 Glsi-ChrGlsi13 25822672 25835300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0712 144 542 Ion Channels AT2G29120 41.346 7.89e-94 305