Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0710 ATGTCAACCCTGCACAAAAGCCTTCGCTTTTACCTCGTATTTCCCTGCTTGTTTTTACTATGTCTCTGGGCGGGACCCTTAATGGCGAAGGAGGTTATACCAATAGGGGTAGTTCTTGATTTGAACTCCTCAATTGGAAGAATGGCTATGAGCTGCATAAGGATGGCTCATCAGGACTTCTATAAACACTATCCTCATTACAAAACCAGACTTGACCTTCGAACTAGGGATTCTGAGAATGATATCGTGTACGATGCGGTAGTTGGAGACGTAACAATTGTAGCTAATCGCGCCAATTATGTTGATTTTACCTTGCCATATGCAGAATCAGGCGTGAAAATGGTGGTTTCCATGAAAGACGATGAGAGACGAAATATGTGGATCTTCTTAAAGCCTTTGAGTTTGAGTCTTTGGTTGACCACTGGTGCAGCCTTTGTCCTCACAGGTTTCATTATATGGCTTCTTGAACAGCGTACAAACACCGAGTTTCAGGGCTCCCCACAGCAACAAGTTAGCATGATGTTCTGGTTTTCCTTCTCCACACTAGTCTTTGCTCACAAGGAGAGACTAGAGAACAATTGGTCGCGTTTTGTGCTGATTATATGGATATTTGTGGTTCTTATCTTAACACAAAGTTACACTGCGAGTTTGGCTTCAATGTTAACAGTACGAAGATTGCGACCTACGTTCATAGATATAGAAGAGATAAAAGCAAACAAATACTGCGTGGGATATATGAAGGATTCCTTTGTCAAAACGCTTCTGACAGAACATTTAGGATTCAGCGAATCCGCGTTAAAGCCTTATGAGACTCCTGAAGAATATCATCAAGCACTGTCAAATGGTGAGGTCGCTGCTATCATTGATGAAATCAACCATGTCAAGCTCTTCCTCGCAAAATATGGATCTAGGTATTCCACAGTTGGACCTACCTACAAAACCGACGGATTCGGCTTTACGGTGGATGCTGTTGTTGGAGATGTAACAATTGTGGCTAATCGCTCAAACTACGTTGATTTTACGTTGCCATTTTTAGAATCCGGCGTGTCAATGGTGGTCTCAGTGAAGAAGCAGAAGAACATGTGGATCTTCTTGAAACCATTACGTTGGGATATGTGGCTGACAACCGGCGTAGCTTTCGTCTTGACTGGTTTCATTGTGTGGGTTCTCGAACATCGATCAAACTCGGAATTTAGAGGCACCCCAAGGAACCAACTTGCCGTGGTCTTCTGGTTTTCCTTCTCAACAATTGTCTTTGCTCACAGAGAGAGAACAGAGAACAATTTGTCGCGACTGGTGCTGATTATATGGGTTTTTGTGGTTCTCATCATAACACAAAGTTATACTGCAAGTTTAGCTACAACCCTAACTGTACAAAAGCTTCATCCTGCATTCATGGACATAGAGGAGATAAAAACCAATGGTTACTTTGTGGGACATTTGAAGAGATCCTTTGTGAGAGGACTTTTAATAGATCATTTGGGATTCAATGAGTCTAAGTTGAAGGGCTATGACAGTCCTGAGGCCTATGACCAAGCTCTGTCTCTGGGTAGCGACAATGGTGGCGTTGCTGCTATCTTTGATGAAATCTTCTATCTCAATATTTTCCTCGCTAAATATGGCTCTGGGTATAAGATGGTTGGGCCAACCTACAAGACAGATGGCTTCGGCTTTCCGGCAATGTTATCCACTGCTAATTTTTTAAACCCTACATTTTCATCGTAA 1725 0.4249 MSTLHKSLRFYLVFPCLFLLCLWAGPLMAKEVIPIGVVLDLNSSIGRMAMSCIRMAHQDFYKHYPHYKTRLDLRTRDSENDIVYDAVVGDVTIVANRANYVDFTLPYAESGVKMVVSMKDDERRNMWIFLKPLSLSLWLTTGAAFVLTGFIIWLLEQRTNTEFQGSPQQQVSMMFWFSFSTLVFAHKERLENNWSRFVLIIWIFVVLILTQSYTASLASMLTVRRLRPTFIDIEEIKANKYCVGYMKDSFVKTLLTEHLGFSESALKPYETPEEYHQALSNGEVAAIIDEINHVKLFLAKYGSRYSTVGPTYKTDGFGFTVDAVVGDVTIVANRSNYVDFTLPFLESGVSMVVSVKKQKNMWIFLKPLRWDMWLTTGVAFVLTGFIVWVLEHRSNSEFRGTPRNQLAVVFWFSFSTIVFAHRERTENNLSRLVLIIWVFVVLIITQSYTASLATTLTVQKLHPAFMDIEEIKTNGYFVGHLKRSFVRGLLIDHLGFNESKLKGYDSPEAYDQALSLGSDNGGVAAIFDEIFYLNIFLAKYGSGYKMVGPTYKTDGFGFPAMLSTANFLNPTFSS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0710 574 Pfam Bacterial extracellular solute-binding proteins, family 3 84 316 IPR001638 -
Glsi13g0710 574 SMART GluR_14 220 570 IPR001320 GO:0015276|GO:0016020
Glsi13g0710 574 Gene3D - 127 259 - -
Glsi13g0710 574 Gene3D - 361 486 - -
Glsi13g0710 574 SUPERFAMILY Periplasmic binding protein-like II 321 558 - -
Glsi13g0710 574 Gene3D - 78 126 - -
Glsi13g0710 574 FunFam Glutamate receptor 508 556 - -
Glsi13g0710 574 Pfam Ligand-gated ion channel 370 472 IPR001320 GO:0015276|GO:0016020
Glsi13g0710 574 SUPERFAMILY Periplasmic binding protein-like II 84 320 - -
Glsi13g0710 574 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 84 319 IPR015683 -
Glsi13g0710 574 Pfam Ligand-gated ion channel 134 239 IPR001320 GO:0015276|GO:0016020
Glsi13g0710 574 FunFam Glutamate receptor 126 256 - -
Glsi13g0710 574 Gene3D - 318 360 - -
Glsi13g0710 574 FunFam Glutamate receptor 361 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0710 Glsi-ChrGlsi13 25799866 25810942 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0710 10 83 Ion Channels AT2G29120 38.961 2.42e-08 55.1