Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0702 ATGGGATCCTCCCTCAGTTGCTATGGTTCACCCAAGATCGAAGAAGGGCCAACAACATATTGTGATGTGGTTAAGAAATCATGGAGAATTTTCACATACAAGGAGTTGCATACAGCTACCAATGGTTTCAGTGAGGATAATAAACTTGGTGAAGGTGGTTTTGGAAGTGTCTACTGGGGAAAAACCACTGATGGTCTCCAAATAGCGGTGAAGAAACTGAAAGCGATGACCTCAAAGGCAGAGATGGAATTTGCCGTAGAAGTTGAAGTTCTGGGAAGGGTTCGTCACAATAATTTGCTTGGTCTTAGGGGATATTGTGTTGGGGCTGATCAACTCCTCATCGTCTACGATTACATGCCTAATCTCAGCCTTCTTTCTCATCTCCATGGCCAATTTGCTGTTGAAGTCCAACTCGACTGGAAAAAGAGATTCAACATTGCCATTGGCTCCGCTGAGGGTTTATTGTACCTGCACCATGAGGTCACACCCCACATAATCCACAGGGACATAAAGGCAAGCAATGTGCTTCTGAATTCAGATTTTGAACCTCTAGTCGCCGATTTTGGGTTTGCAAAGTTAATCCCAGATGGGGTTAGCCACATGACTACCCGTGTTAAGGGCACATTGGGGTACTTGGCCCCTGAATATGCCATGTGGGGAAAGGTTTCTGAGAGTTGTGACGTTTATAGCTTTGGAATCCTTCTGCTAGAGCTTGTAACTGGAAGAAAACCCATAGAAAAGCTCCCAGGTGGGGTTAAGATAACGATAACTGAGTGGGCTGAACCATTGATAACCAAAGGAAGGTTTAAGGAGATGGTGGATCCAAGGCTTAGAGGGAACTACGATGAAAATCAAGTGAAACAAGCCATCAATGTGGCTGCTCTTTGTGTGCAAAGTGAACCTGAGAAGCGACCTAACATGAAGCGAGTGGTTAATTCTCTGAAAGGATGTGAACCTCAAGGCAAAGTGAAGAAGATAAGGTTGAATAGTATCAAGTATAATAAAGAACTATTGGAACTTGATCAAACTAATGATGATGATACCAATGGTTATGGAGTATTTAGTGCCCTAGAGGTTCAAAAGATGCACGATCACAATGGTGACAAGAAAAATGAGTAA 1119 0.4325 MGSSLSCYGSPKIEEGPTTYCDVVKKSWRIFTYKELHTATNGFSEDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMTSKAEMEFAVEVEVLGRVRHNNLLGLRGYCVGADQLLIVYDYMPNLSLLSHLHGQFAVEVQLDWKKRFNIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPDGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKITITEWAEPLITKGRFKEMVDPRLRGNYDENQVKQAINVAALCVQSEPEKRPNMKRVVNSLKGCEPQGKVKKIRLNSIKYNKELLELDQTNDDDTNGYGVFSALEVQKMHDHNGDKKNE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0702 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 17 118 - -
Glsi13g0702 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 119 331 - -
Glsi13g0702 372 SUPERFAMILY Protein kinase-like (PK-like) 23 314 IPR011009 -
Glsi13g0702 372 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Glsi13g0702 372 SMART serkin_6 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0702 372 CDD STKc_IRAK 49 316 - -
Glsi13g0702 372 Gene3D Phosphorylase Kinase; domain 1 17 118 - -
Glsi13g0702 372 PANTHER OS01G0253100 PROTEIN 26 320 - -
Glsi13g0702 372 Gene3D Transferase(Phosphotransferase) domain 1 119 337 - -
Glsi13g0702 372 Pfam Protein tyrosine and serine/threonine kinase 46 314 IPR001245 GO:0004672|GO:0006468
Glsi13g0702 372 ProSiteProfiles Protein kinase domain profile. 43 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0702 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0702 Glsi-ChrGlsi13 25698824 25701219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0702 31 356 Trihelix Transcription Factor Family AT1G70460 45.133 2.55e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Glsi13g0702 PK_Tyr_Ser-Thr 4.5e-44 CL0016