Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0701 ATGGGAATTGAGAGAGGAAGCCTCAAGGGGTTTCGAAGCTGGAGTGTGCCGCCGAAGCTATGCGACTCGTGCAAATCGGCGGCGGCGGCGGTTTTCTGCCGAGCTGATTCGGCTTTTCTGTGCATGCTTTGTGATAACAAAATCCACTGCGCCAATAAGCTGGCGTCCCGCCATGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAAGCCCCTGCTTCCGTCACATGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGATTCGGATATCCATTCTGCGAACCCGCTTGCCCGCCGTCACGAGAGGATCCCGGTGGAGCCCTTCTTTGACTCGGCTGAGTCTATTGTGAAATCCTCTGCTGCTGTCTTTAACTCGCTGGTTCCGACTGATAATGGGATTGGTTCTGATGGCTTCCCCCACGACGATGTCGAAGCAGCCACGTGGGTAATACCCAACCCAAATTTCGGCACGAAGATTATGGATGCTCCGGACATCAAACCAGAAGAGATGTTTTTCTCTGAAATGGATCCATTCCTGGATTTCGATTATCCAAATTCCTTCGATTATAACAGTTACAACAGTGCCGTTAACGATAGCGTAGTCCCAGTTCAAAGCAAACCTCCGGTGATGAATCATCTAGAGAGTTGCTACGATATCGATTTTTGCAAATCAAAGCTTTCTTCAATTAGCTACCCAACACAGAGTTTCAGTCGCCAAAGCGTGTCGTCGTCTTCGGTAGACGTTGGAGTGGTCCCAGACGGAGGCAACACGGTGTCAGACACCTCGTACCCATTTGGCCGGAACATAAGCAACAGTTCCGATTCAGGCGGAATCATGTCGGCGGGTAACAACCAGTCGGGGAGTCAGGTGTGTGGTATGAATCGCGAAGCCCGAGTATTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTTGAGAAAACCATACGCTACGCTTCGCGAAAGGCGTACGCGGAAACCCGGCCAAGAATCAAAGGCCGGTTCGCCAAGCGGACCGAAGTCGACTCTGATGTGGACCGCCTCTTTAGCCCCGCCGACCCCGCAGCTCTGAATCTCATTCTGGATGCTCAGTACGGCGTCGTTCCCTCGTTTTAA 1116 0.5314 MGIERGSLKGFRSWSVPPKLCDSCKSAAAAVFCRADSAFLCMLCDNKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSAESIVKSSAAVFNSLVPTDNGIGSDGFPHDDVEAATWVIPNPNFGTKIMDAPDIKPEEMFFSEMDPFLDFDYPNSFDYNSYNSAVNDSVVPVQSKPPVMNHLESCYDIDFCKSKLSSISYPTQSFSRQSVSSSSVDVGVVPDGGNTVSDTSYPFGRNISNSSDSGGIMSAGNNQSGSQVCGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVDSDVDRLFSPADPAALNLILDAQYGVVPSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0701 371 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Glsi13g0701 371 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Glsi13g0701 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 354 IPR045281 GO:0009909
Glsi13g0701 371 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Glsi13g0701 371 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Glsi13g0701 371 CDD Bbox1_BBX-like 64 106 - -
Glsi13g0701 371 CDD Bbox1_BBX-like 20 63 - -
Glsi13g0701 371 Pfam CCT motif 296 338 IPR010402 GO:0005515
Glsi13g0701 371 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Glsi13g0701 371 SMART bboxneu5 16 63 IPR000315 GO:0008270
Glsi13g0701 371 SMART bboxneu5 64 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0701 Glsi-ChrGlsi13 25693276 25694471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0701 1 371 C2C2-CO-like Transcription Factor Family AT5G57660 51.562 3.84e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi13g0701 zf-B_box 5.2e-07 No_clan