Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0692 ATGAGTTTCCACCCTAATGCTTCTCTTTACCTAAATCACCCTGATGAGAATAAACTTAACCTAGATCTTCTCCTTGAGCCTTCTTATTCTTCTTCATCTTCAGTACCAATGGCCAGTTCTACCGAGCCTCGGGTATTTTCATGCAACTATTGCCAGAGAAAGTTTTACAGCTCCCAAGCGTTGGGAGGTCACCAGAATGCGCACAAGCTGGAAAGGACACTGGCCAAGAAAAGCAGGGAGCTAAGCTCTTCCATGCAAGCTTATAATGGAGGGTTAGAGGAGCAATGGTCAAGCTTCAGTGGTTCGCACCATCTCGGTGGGTTGGAGAACCCTGGACACGGTGGGAGAGTTGCAGGTGGTCCAGGCTGTGGAAGGAAGGAGTTTAGCTATGGTTCCAAAGAAAAGGGGGTGGCTCCCTGGTCCAGGTCATCATTAGCGTCTGAAATTCTTCAGGAGGATATCAGCCAACTTGACCTCTCCTTAAGGCTCTGA 492 0.4858 MSFHPNASLYLNHPDENKLNLDLLLEPSYSSSSSVPMASSTEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSSMQAYNGGLEEQWSSFSGSHHLGGLENPGHGGRVAGGPGCGRKEFSYGSKEKGVAPWSRSSLASEILQEDISQLDLSLRL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0692 163 Gene3D Classic Zinc Finger 28 102 - -
Glsi13g0692 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Glsi13g0692 163 FunFam Zinc finger protein 2 25 91 - -
Glsi13g0692 163 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Glsi13g0692 163 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 107 IPR044246 GO:0009788
Glsi13g0692 163 SUPERFAMILY beta-beta-alpha zinc fingers 42 73 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0692 Glsi-ChrGlsi13 25633110 25633601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0692 1 163 C2H2 Transcription Factor Family AT5G57520 47.929 2.03e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi13g0692 None None None