Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0681 ATGCAAATCGTAACCCTACAAATTTATGCACAGAATAAGTTAGTCATCTATGTTGAGTGGGTCCTTGAGGAAGGAATGTGTTGCTATGAAGAAGCTTATTGTCAATCAGACTCTTCCACCTTCAGTGTCTCATTGCAAGTACTGTGCTATGAAAAGAAAGGATCAGATGTGGGCTCCAGATATGATCCAGAACTCTCAGAGCTCGGTGATGATCCAAACCCATTAGTTGATGTAGAGAGAAATAGTAGTTGTGCAAATAATAACGTTACTCGCGTCCATACTTTTTCTGAGTTGATGTCTTCTTCTGAGAATCATGCTGGTGCTTTAGAACATTATGCAGAAGATAAAAAGTATCCAAAGGGAGGGGTAATAAATCGAAGTGCATTAAACGGATTTTGGAAGGCTACAGGACATTCAATAGCTGTGAAATCATCCGAAGGTCACACAATTGGACATAAAAGAACGTTGGTGTTTTACGATGGACGTGTCAAGACTAAATGGATCATGCAGGAATACAAGCTTGCTAACCTTCCGAAGAGAATCGAGAATGGTCCAAATGATACAAGGCTTCACAACTATGTTCTATGTAGAATCTATAACAAAAGGAGGACAAAATCTATCTCTGAATGGTTATTTGACACTGGTGAGAAAAACCTCACAATAGCAAATAATCACCGTAACAGCTTTATGAATGTTATGTCACAATTGAATCAAAACATGTTTGCTGAGAACGGAGGGCAAATTCTAAATTTTGAAGAACAAGTTTGGGCAAATACCGAGAACACACTTCCTTTGCAATCTCAAGGTGTCATAATTGATAATCAGCAAACATTGATAATGTCTCCCAGAATTGACAATTCAGAAAGAATTGATCCAGATAATCTGACGAATATTAGTGCTGGATTTAGTGTTCCTGAAATTGTTCCTGCTGGATTTAGAGTTTCTGAGACTGCTCTTACTGGGTTTGAAATTGCTGAAATTGTTTGTACTGGATTTGGAGTTTCTGAAAATATTCATGCTGGGTTTAGATCTTCTGAGAATGTTGGTATTGGGATTATTAGAACTGACAATCCTCTAAAGAGACAAAAATATAATCCAAATGAGATGCAGTTTGATAACTATGTTTTGTGGGAACAGAAAGATAAACCTTGTTCTACAATACCGTGGCAGCCATTGGAACAGAACACCAACACCAACAGAGACGCCAACATAAATTTGTATGATGCTGTTGCTGAGAATGTTACTGATGTTCAGAATATTAATGTTGAGTACAGTGTTGCTGAGAATGTTTGCCCTGGGATTCTCAGAAAAGATGGTATTATTGACGTTCCCTTGGATGACTGCTTTGAGAGGGGTGAAGATCATCCTTTACCACAACTTCAAGGACAAGAGGATAGTTTTCCACGTATCAATGAGGAAGATCAAGGGAATTATCTTTCAGATATTTCAAATCAATACGAGTTTGGTTTCTTCCATGATTTTTGGTCTACTCCTTTTTCTTGA 1503 0.3779 MQIVTLQIYAQNKLVIYVEWVLEEGMCCYEEAYCQSDSSTFSVSLQVLCYEKKGSDVGSRYDPELSELGDDPNPLVDVERNSSCANNNVTRVHTFSELMSSSENHAGALEHYAEDKKYPKGGVINRSALNGFWKATGHSIAVKSSEGHTIGHKRTLVFYDGRVKTKWIMQEYKLANLPKRIENGPNDTRLHNYVLCRIYNKRRTKSISEWLFDTGEKNLTIANNHRNSFMNVMSQLNQNMFAENGGQILNFEEQVWANTENTLPLQSQGVIIDNQQTLIMSPRIDNSERIDPDNLTNISAGFSVPEIVPAGFRVSETALTGFEIAEIVCTGFGVSENIHAGFRSSENVGIGIIRTDNPLKRQKYNPNEMQFDNYVLWEQKDKPCSTIPWQPLEQNTNTNRDANINLYDAVAENVTDVQNINVEYSVAENVCPGILRKDGIIDVPLDDCFERGEDHPLPQLQGQEDSFPRINEEDQGNYLSDISNQYEFGFFHDFWSTPFS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0681 500 Gene3D NAC domain 74 206 IPR036093 GO:0003677|GO:0006355
Glsi13g0681 500 Pfam No apical meristem (NAM) protein 113 174 IPR003441 GO:0003677|GO:0006355
Glsi13g0681 500 ProSiteProfiles NAC domain profile. 55 201 IPR003441 GO:0003677|GO:0006355
Glsi13g0681 500 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 114 231 - -
Glsi13g0681 500 SUPERFAMILY NAC domain 113 201 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0681 Glsi-ChrGlsi13 25568042 25573290 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0681 115 228 NAC Transcription Factor Family AT5G08790 42.857 1.02e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi13g0681 NAM 5.5e-09 No_clan