Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0672 ATGGATAGTCCTACTGCAATTCGAACTTCAACACCCGGTTCTGCACCGGGTTCGGGGCCTGGTTCTAATGATGATAGCCAGCGTGTTAAATTCTTATGTAGCTTTCTGGGAAATATAATGCCCCGTCCTCAAGATGGGAAGCTTCGATATGTTGGTGGTGAGACGCGAATTGTGAGTGTTCCACGAGATATCGGTTTTGAGGAGTTGATGAGTAAGATGAGGGAGCTGTATGACGGGGCAGCAGTATTGAAGTACCAGCAACCTGATGAGGATCTTGATGCCCTTGTCTCAGTTGTGAATGATGATGATGTGATTAACATGATGGAAGAGTATGACAAATTGGGTTCGGGAGATGGATTCACTAGGCTCAGGATTTTTTTATTTTCGCAATCTGAACAAGATGGTTCTTCGCCCTTCATTGATGGGGATGAGAGGGACACTGAGAGGAGGTATGTTGATGCATTGAATAATTTAAATGATGCTTCTGATTTTAGGAAGCAGCAACAACCTGAATTTTCTGTGATTAACTCGGTTGAGGATATCCATTTAGCTGATCAGTTCTTTAATCCAATCAGTGTGGATGGCGGCCTTCATAGCCAGAGAAGTGGTGAGATATCTATGACACACTATAATGTGCATCATCCCACCACTCCTCACATTGGATCAGGGCAACACCAGCAACCTATGACCCAGAGGTATAATGAAACGGATGCACCATGGAGTCCTGCCTATTTTTCTCCTAGGCATCACGGTCACCATGACTCAAGATCATTGGTAGAATTTCCATCTTCTCCTTCTGCCACAAGGTTTCATATGCCATTTGCAGAGTTACCAGATAAGTGCACAGATAGAATGCCAGAAGAATATGCTCGGCATCAGTTAAATCACCATCCTGTGTATGACAATAACCTACAATATTCTGAAAATGTTGTGTGGTTTCCAACTGGGGCTGCATCTAATGAGAAGTCAGGTTTTCCAGGCAATATTATTCATGGCCCCCATGTTCTTGATGGGAATAGTATATGTGAGCACTGCCGGATGAGTTTTCAGAGAAGTCAACCACATTTTGATCATCCCAGTATCAGTAATGGACTTCCACAGGTTGCTAATCCATGTGCAGAATGCTCCTCAAATAGGGATGCTTTTGTGATGAATGCTGATGTGAAGTTGCATCCTGTGCTTTATCCCAATGAGCCAAATAATGATCACAGATCTGCTTACAATGATACTCAAAATCATGAGAAAGGATGGGTTTTGCCACATCAAACAAATACTCGGATGGAGGAATCAAGAGGACATGTGTCTGGATCTGGAAGATTGAACGATCATTATGTTTTTGATGGTCCTGGCATAAATTTCTCTCTTGGGCATGGGAGTGTAGCTGATGGACATCATTTGTCTTTGAATTATGTTCATCAACGAGTTGGACCTGAATTGGGGCCTGAAATGTTTCATGACCAAACTGTGGCTACGACAACCCATCTACAAATTCCTCCTCTGGAAGAGCGTAGTGTGTGGTATGGGAATCCACCTCCTTCTTATGGAGTGGACAGTCATTACCCTGCAACTCGTGGACATGTACATGGGTCTGCTTTCTGGAGAAACACTCCAACTTCACTTCACATTGGACCATCTTATGAGGCATCTAGTCCACCTCGGCAGGGAAATGGTGTGGTAAATGCAGGAATAAGGGGAGAGGGTAGTCCAAGAATTTACATTGGGCCAGATAGTCAACAACCTTGGGTTGATTCCACACAGAAAATGTCAGCTCACGATGGGTCAGCCACCCCAGAATATCCTTACGCTCATGCTCTGACATTGAAACCAAAGGTTCTTGGTCAAGAAAATCAACACCCAGTTACTGTAGGCACCATTCAACCCCCACAGGACATAAATGTTGGCATTCGCTTGGAATCAGTGCCTCTTCCAAAATCATCTTTCACTATGGTTCACAACAAAGAGGTTTCAAGAAATGATACTCATATGATAGAAGGCATGAAATTGCAATCTCGAAGTTTGCTTGGAGAAGAAAAAGAGGCTGAAAATGTGGACAAGGTTGAGAACTCTAATGTGCAGAGTATATCTTTTTCAGAGCAAAATCAAATTGCTGAGAATGATAGTGAAGCTGCTGCTCCTGTTGAGTCTAACAATTCAAAGTCAAAACCTGCAGAAGACTGTGGTGACGTTGAGAAACTGGTTGATGGGGACCTATCTGCTTCTGAAGCTTCCAACCTTCTAGGTAACCAATTCAGTTTCTTGCCTCAGTTGATTGCTACTGTAAAGAAGGTTGCATTGGAAGGTGCTAAAGAGGATGTGAAAGCTAGAGCTGAGGAGCACACCACTTCTCAGATGCACAATTCAGCAACCAAAGAAGATGCAGCAAATGAAGCAGAGTTGACGAATGCTCATGGTGATTTGGAGTTGGATTCTGATAATGACAATGTAGATACTTCAAAAATTGAGCCTACAAAAGCTGAGGCGGAAGCTATTGCTAGGGGATTGCAGACAATTAAAAATGATGATTTGGAGGAGATCCGTGAACTAGGTTCTGGAACTTATGGGGCTGTTTATCATGGAAAATGGAAAGGTTCTGATGTAGCAATTAAGAGGATAAAGGCCAGCTGTTTTGCTGGAAGACCGTCTGAAAGAGAAAGATTGATTGCGGATTTCTGGAAAGAGGCATTGATACTGAGTTCATTACATCACCCAAATGTTGTCTCCTTCTATGGCATTGTCCGTGATGGCCCTGATGGTTCTTTAGCAACTTTGACAGAATTCATGGTTAATGGATCTCTGAAACAGTTCTTACATAAGAAAGATAGAACAATAGATCGTCGTAAGAGGCTCATTATAGCTATGGATGCGGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTGTTAGTCAATATGAGAGATCCACAGCGGCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTAAAACAGCACACTCTTGTATCAGGAGGGGTACGGGGAACTTTGCCATGGATGGCACCTGAACTCCTAAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCATTCGGGATTGTCATGTGGGAATTGCTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGTATTGTGAACAATACTTTGCGTCCCCAAATCCCAACGTGGTGTGATCCTGAGTGGAAGTCTCTCATGGAAAGTTGTTGGGCTTCTGATCCAGCACAAAGGCCATCATTTTCTGAAATTTCTAAGAAGCTGAGAAGTATGGCTGCTCCAATGAATGTGAAATAG 3348 0.4298 MDSPTAIRTSTPGSAPGSGPGSNDDSQRVKFLCSFLGNIMPRPQDGKLRYVGGETRIVSVPRDIGFEELMSKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSPFIDGDERDTERRYVDALNNLNDASDFRKQQQPEFSVINSVEDIHLADQFFNPISVDGGLHSQRSGEISMTHYNVHHPTTPHIGSGQHQQPMTQRYNETDAPWSPAYFSPRHHGHHDSRSLVEFPSSPSATRFHMPFAELPDKCTDRMPEEYARHQLNHHPVYDNNLQYSENVVWFPTGAASNEKSGFPGNIIHGPHVLDGNSICEHCRMSFQRSQPHFDHPSISNGLPQVANPCAECSSNRDAFVMNADVKLHPVLYPNEPNNDHRSAYNDTQNHEKGWVLPHQTNTRMEESRGHVSGSGRLNDHYVFDGPGINFSLGHGSVADGHHLSLNYVHQRVGPELGPEMFHDQTVATTTHLQIPPLEERSVWYGNPPPSYGVDSHYPATRGHVHGSAFWRNTPTSLHIGPSYEASSPPRQGNGVVNAGIRGEGSPRIYIGPDSQQPWVDSTQKMSAHDGSATPEYPYAHALTLKPKVLGQENQHPVTVGTIQPPQDINVGIRLESVPLPKSSFTMVHNKEVSRNDTHMIEGMKLQSRSLLGEEKEAENVDKVENSNVQSISFSEQNQIAENDSEAAAPVESNNSKSKPAEDCGDVEKLVDGDLSASEASNLLGNQFSFLPQLIATVKKVALEGAKEDVKARAEEHTTSQMHNSATKEDAANEAELTNAHGDLELDSDNDNVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATLTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPAQRPSFSEISKKLRSMAAPMNVK 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 669 727 - -
Glsi13g0672 1115 PANTHER SERINE-THREONINE PROTEIN KINASE 73 1107 - -
Glsi13g0672 1115 ProSitePatterns Protein kinases ATP-binding region signature. 848 869 IPR017441 GO:0005524
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 671 685 - -
Glsi13g0672 1115 Gene3D Transferase(Phosphotransferase) domain 1 928 1114 - -
Glsi13g0672 1115 CDD STKc_MAP3K-like 848 1105 - -
Glsi13g0672 1115 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 835 929 - -
Glsi13g0672 1115 SUPERFAMILY Protein kinase-like (PK-like) 834 1103 IPR011009 -
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 686 720 - -
Glsi13g0672 1115 Pfam Protein tyrosine and serine/threonine kinase 843 1105 IPR001245 GO:0004672|GO:0006468
Glsi13g0672 1115 Gene3D - 47 131 - -
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 543 592 - -
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 578 592 - -
Glsi13g0672 1115 PRINTS Tyrosine kinase catalytic domain signature 1032 1054 IPR001245 GO:0004672|GO:0006468
Glsi13g0672 1115 PRINTS Tyrosine kinase catalytic domain signature 961 979 IPR001245 GO:0004672|GO:0006468
Glsi13g0672 1115 PRINTS Tyrosine kinase catalytic domain signature 924 937 IPR001245 GO:0004672|GO:0006468
Glsi13g0672 1115 PRINTS Tyrosine kinase catalytic domain signature 1076 1098 IPR001245 GO:0004672|GO:0006468
Glsi13g0672 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 967 979 IPR008271 GO:0004672|GO:0006468
Glsi13g0672 1115 Gene3D Phosphorylase Kinase; domain 1 827 927 - -
Glsi13g0672 1115 SMART serkin_6 842 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0672 1115 Pfam PB1 domain 44 129 IPR000270 GO:0005515
Glsi13g0672 1115 CDD PB1_UP2 32 128 - -
Glsi13g0672 1115 SUPERFAMILY CAD & PB1 domains 45 135 - -
Glsi13g0672 1115 ProSiteProfiles Protein kinase domain profile. 842 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0672 1115 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 930 1115 - -
Glsi13g0672 1115 MobiDBLite consensus disorder prediction 1 25 - -
Glsi13g0672 1115 SMART PB1_new 43 128 IPR000270 GO:0005515
Glsi13g0672 1115 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0672 Glsi-ChrGlsi13 25467923 25474816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0672 23 1115 MAP Kinase Kinase Kinase AT5G57610 54.594 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Glsi13g0672 PK_Tyr_Ser-Thr 1.3e-61 CL0016