Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0670 ATGGGTCGAGCTCCATGCTGTGACAAAGCCAACGTGAAGAAAGGACCTTGGTCGACTGAAGAAGATGCTAAACTTAGAGCCTATATTGAACAGCATGGAACTGGAGGCAACTGGATTGCTCTTCCTCAGAAAATTGGCCTCAAGAGGTGTGGGAAGAGTTGCAGACTAAGATGGTTAAATTACCTTAGGCCTAACATCAAGCATGGTGGATTCACTGAAGAAGAAGACAACATCATAAGCAGCCTTTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCAGCTCAGCTACCTGGAAGAACAGACAATGACATCAAGAACTACTGGAACACCAAATTGAAGAAGAAACTACTTGGGAGGCGCAAACAGTGCTCCAATTTCAATAATCCCAAAGAGAACTCAAATTCTGCAGAAACCCTAAGTAACTCGGCTCTTGAAAGGCTTCAACTTCATATGCAACTTCACAGCCTTCAAAATCCTTTCTCTTTCTACAATAATCCTGCACTTTGGCCCAAGTTGCATCCTTTCCAAGAAAATATGATCCAGGGCCTAGAATCACAATCAAATTTGAATCATAGCTCGAACCCCATGATGCAAAAAGACGAATTCTACAAATTACCAACTGATGATGGAGTTCAAGAAAAAGGTGCAGAGAATCCAAAGGTTGATGATCTTTTGGAGATTAATATTCCAATGGATAGAGAAGAGGGTGTTGAGCAGTTCGATATGGGAATTCATCAAGATTCTGCACTGCAAGATGAACTTGGTGACATTCTGAACAACAGAAGAATGGTGGGTAGTAATTACATGACACAGGAAGACAAGACATTATCGGGGGAATTTGATAATTGTTTCGGAGAAATGACTAATGGTTCTTCAAAGGACAGTTTGATGTGGTGGTCCAATGATTTTGATGCCAAATCAGCATCTTCAAACTCTTGGGATTCAACTGCTACTCCTGTTCTTCAGACAGAGGGGATGTTTCAGGATTATGAACTAGGTTATATCTTATAG 1014 0.4122 MGRAPCCDKANVKKGPWSTEEDAKLRAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIISSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGRRKQCSNFNNPKENSNSAETLSNSALERLQLHMQLHSLQNPFSFYNNPALWPKLHPFQENMIQGLESQSNLNHSSNPMMQKDEFYKLPTDDGVQEKGAENPKVDDLLEINIPMDREEGVEQFDMGIHQDSALQDELGDILNNRRMVGSNYMTQEDKTLSGEFDNCFGEMTNGSSKDSLMWWSNDFDAKSASSNSWDSTATPVLQTEGMFQDYELGYIL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0670 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi13g0670 337 CDD SANT 71 113 IPR001005 -
Glsi13g0670 337 FunFam Transcription factor RAX3 7 68 - -
Glsi13g0670 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi13g0670 337 Gene3D - 7 68 - -
Glsi13g0670 337 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi13g0670 337 Gene3D - 70 144 - -
Glsi13g0670 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi13g0670 337 CDD SANT 16 62 IPR001005 -
Glsi13g0670 337 SMART sant 67 115 IPR001005 -
Glsi13g0670 337 SMART sant 13 64 IPR001005 -
Glsi13g0670 337 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi13g0670 337 PANTHER OS09G0431300 PROTEIN 1 318 - -
Glsi13g0670 337 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi13g0670 337 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0670 Glsi-ChrGlsi13 25460155 25462202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0670 1 331 MYB Transcription Factor Family AT5G57620 51.852 2.66e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g0670 Myb_DNA-binding 1.9e-13 CL0123