Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0642 ATGGATTCTTCTTCTTCCCAGTCCCAGAACTGGCTCGCTTTCTCTCTCTCTAACCCCTTATCTTCCTCCTCTCACTTCCCCCTTTTCCACTCCTTCACCTCTCCTTCCCCTACTCCCACTCTCACTCTCACAGGGAGTAGCACCGTCGACGCATCGCCGGAAGCAAAGAATGGAGCCGGTGGAGGAGGTCAAACCGACCGTTCGATGCTCACCGGGGGCCCCAAGTTCGAGGACTTTCTCGGTGGCTCCACCGCCCCGCCCACAACTGCACCACCACCGCAGTTTTCCACCGACAACACCTCGCTCAGTACCGTGTTGGACAACGAGATATACGACTCTGAGCTTAAGACGATAGCCGCTAGCTTCCTTCGCGGCTTCGCCTCCGGACAAACCGAGCCCCAAAACCAGCCTCTGGCTCCATCCGAGCCGTCCCCGAAGAAGACCGTCGACACCTTTGGCCAACGCACCTCTATCTACCGCGGCGTCACACGGCATAGATGGACGGGACGATATGAAGCTCATCTATGGGATAACAGCTGCAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCGACTACCACAACCAACTTTCCAATTTCAAACTATGAGAAGGAACTGGTGGAGATGAAGAACATGACAAGGCAGGAATTTGTTGCTTCTCTTCGAAGGAAGAGCAGTGGCACCCAAGAAGAAGCTGCGGAGGCCTATGACATAGCAGCTATCAAATTCAGAGGACTAAATGCTGTCACCAACTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCGAATAGCAGCCTTCCCGTCGGGGGATTATCCAGCAAAACCAAGAACTCCTCAGACTCTCTATCTGAGAGCAAAAGCCACGAGGGAAATAATCGATCTGATGACCGAGCTGATCTCTCCTCAGCTTCGTCAGTAACATTTGGATCACAACCTTCAAGCTCTTCTCTGAGCTTTGCCATACCCATCAAACAGGACCCTACTTCAGATTACTGGTCCATTCTTGGGTACCAAAACAATCCTTCTCTGAACAGTGCCAAGAACTCATCTGTTACACCCACTTCATTTCAACCTTCCACCACCACTGGGTCTACCTTCAACATGGACTTCTCCACCCAGTCAAACACTAGCAGTGAAAGCAATAACGCATTTTTCAATGCAGGAATCTTTGTTCATCAACAAAGCGGTGGAAGTGGTGCTTCAAGCTCAATCCCATTGGCCATGCCTATTACTTTAAATGCTCATGCATGCAGGGATGAGAATCTGTGCATAATGATGAAAGTGAAGGACAAACAATGGAGGAGAATGGTGTTGGTGGGTTATGAAATTCTAACATGCACAGTTCTGAAGGACTAG 1428 0.5035 MDSSSSQSQNWLAFSLSNPLSSSSHFPLFHSFTSPSPTPTLTLTGSSTVDASPEAKNGAGGGGQTDRSMLTGGPKFEDFLGGSTAPPTTAPPPQFSTDNTSLSTVLDNEIYDSELKTIAASFLRGFASGQTEPQNQPLAPSEPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELVEMKNMTRQEFVASLRRKSSGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPVGGLSSKTKNSSDSLSESKSHEGNNRSDDRADLSSASSVTFGSQPSSSSLSFAIPIKQDPTSDYWSILGYQNNPSLNSAKNSSVTPTSFQPSTTTGSTFNMDFSTQSNTSSESNNAFFNAGIFVHQQSGGSGASSSIPLAMPITLNAHACRDENLCIMMKVKDKQWRRMVLVGYEILTCTVLKD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0642 475 MobiDBLite consensus disorder prediction 321 341 - -
Glsi13g0642 475 MobiDBLite consensus disorder prediction 37 53 - -
Glsi13g0642 475 MobiDBLite consensus disorder prediction 367 386 - -
Glsi13g0642 475 MobiDBLite consensus disorder prediction 305 320 - -
Glsi13g0642 475 SUPERFAMILY DNA-binding domain 157 223 IPR016177 GO:0003677
Glsi13g0642 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 251 365 - -
Glsi13g0642 475 CDD AP2 157 223 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 ProSiteProfiles AP2/ERF domain profile. 158 221 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 MobiDBLite consensus disorder prediction 291 341 - -
Glsi13g0642 475 SMART rav1_2 230 282 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 SMART rav1_2 158 227 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 MobiDBLite consensus disorder prediction 37 99 - -
Glsi13g0642 475 MobiDBLite consensus disorder prediction 128 150 - -
Glsi13g0642 475 PRINTS Ethylene responsive element binding protein signature 258 278 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 SUPERFAMILY DNA-binding domain 250 278 IPR016177 GO:0003677
Glsi13g0642 475 Gene3D AP2/ERF domain 158 223 IPR036955 GO:0003700|GO:0006355
Glsi13g0642 475 Gene3D AP2/ERF domain 235 278 IPR036955 GO:0003700|GO:0006355
Glsi13g0642 475 FunFam AP2-like ethylene-responsive transcription factor ANT 157 223 - -
Glsi13g0642 475 ProSiteProfiles AP2/ERF domain profile. 210 276 IPR001471 GO:0003700|GO:0006355
Glsi13g0642 475 Pfam AP2 domain 158 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0642 Glsi-ChrGlsi13 25198299 25201426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0642 109 365 AP2-EREBP Transcription Factor Family AT5G57390 56.923 4.30e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g0642 AP2 8.8e-10 CL0081