Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0639 ATGAGGTATATTCGGACCAACAGCTTCAAGAGGCTCTTCTCCTTCAGACGACGCAGTTTTGGAGAAGAAGACGTTCAGACACCAAATGGTTCTACAGCCGACGAAAAAGATGAGACCTTGGAGATTCTTCCACTTCGAGAACCTTCTCAAAGACCCACTTGGAAATGCTTCTCTTATGAGGAACTGTTTGATGCCACCAATGGCTTCAGCTCAGAGAATATGGTTGGGAAAGGAGGCTATGCAGAGGTTTACAAGGGAACTTTGAATGATGCTGACGAGATTGCTGTGAAAAGGCTCACGAGAATTTCCAGTGATGAGAGGAAAGAGAAGGAGTTTTTGACAGAGATTGGCACAATTGGTCATGTTCACCATCCAAACGTTTTGCCCCTTCTAGGTTGCTGTATTGACAATGGCCTTTACCTTGTCTTTGAGCTTTCCTCCAAAGGATCAGTTGCATCTCTTCTCCATGATGAAAACTTGCCTCCTATGGATTGGAAAACAAGGCATAAGATAGCTATTGGGACTGCGCTTGGCCTCCACTACCTGCACAAAGGCTGCAAGAGGAGGATAATTCACAGGGACATCAAGGCATCAAACATCCTATTAACTGCAGATTTTGAACCACAGATATCTGATTTTGGACTAGCGAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCAATAGAAGGGACATTTGGCCATTTGGCACCTGAGTACTATATGCATGGAATAGTGGATGAGAAAACAGATGTCTTTGCCTTTGGGGTGTTCTTGCTTGAAGTCATCTCAGGAAGGAAGCCGGTGGACGGTTCTTACCAAAGCTTACACAACTGGGCTAAACCAATATTGAACAAAGAGGAGATAGAAAAGCTGGTAGATCCAAGGCTTGAAAGGGCCTATGATGTTACACAATTACACAGACTCGCCTTTGCAGCTTCTCTCTGCATCCGAGCATCTTCAACTTGGCGACCTACCATGAGCGAGGTATTAGAGGTAATGGATGAGGGGGAAATGAACAAAGAGAAATGGAAGATGCCAGAGGAAGAAGAAGAGCAAGAGGAGTTTTGGGGTTTTGAGGATCTGGAATATGAATATGAAAGTTCCTTCTCACTGTCTCTACCAGACTCCATTGGAAGCACTTAG 1152 0.4462 MRYIRTNSFKRLFSFRRRSFGEEDVQTPNGSTADEKDETLEILPLREPSQRPTWKCFSYEELFDATNGFSSENMVGKGGYAEVYKGTLNDADEIAVKRLTRISSDERKEKEFLTEIGTIGHVHHPNVLPLLGCCIDNGLYLVFELSSKGSVASLLHDENLPPMDWKTRHKIAIGTALGLHYLHKGCKRRIIHRDIKASNILLTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGIVDEKTDVFAFGVFLLEVISGRKPVDGSYQSLHNWAKPILNKEEIEKLVDPRLERAYDVTQLHRLAFAASLCIRASSTWRPTMSEVLEVMDEGEMNKEKWKMPEEEEEQEEFWGFEDLEYEYESSFSLSLPDSIGST 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0639 383 SMART serkin_6 69 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0639 383 Pfam Protein tyrosine and serine/threonine kinase 72 334 IPR001245 GO:0004672|GO:0006468
Glsi13g0639 383 Gene3D Transferase(Phosphotransferase) domain 1 147 362 - -
Glsi13g0639 383 FunFam Putative receptor-like serine/threonine-protein kinase 36 145 - -
Glsi13g0639 383 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Glsi13g0639 383 FunFam Putative receptor-like serine/threonine-protein kinase 147 360 - -
Glsi13g0639 383 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Glsi13g0639 383 SUPERFAMILY Protein kinase-like (PK-like) 49 335 IPR011009 -
Glsi13g0639 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Glsi13g0639 383 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0639 383 PANTHER OS08G0249100 PROTEIN 47 364 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0639 Glsi-ChrGlsi13 25144558 25148552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0639 57 341 Trihelix Transcription Factor Family AT1G70460 45.608 1.48e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi13g0639 PK_Tyr_Ser-Thr 2.6e-41 CL0016