LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0636	ATGCTCATGTTTAATTTGCGGCTGAAGAATAACTTGCCCATTAGCACTTGTGCTAGTTGCTTTGTGATTATTTTTATTGGATCTGTGGCGGTTGTAAGATGGATCGATCGCATGCGCAGAAGCATACAGCTTATTGCAGGCAAACAATTTCGGACTTCCACCATGGATAAATTTCTGAATGATATGGAAAGAGAGAAGCCAATCAGGTTTACCTCACAGCAATTAATGTTAGCAACAGACAACTACAATTTCTTGTTGGGGTCAGGAGGTTTTGGAACTGTCTATAAAGGGACTTTTAGTGATGGAACCATTGTTGCAGTGAAGGTGTTATATGGGAGTTCTGATAAGAGAATAGAGGAGCAGTTCATGGCAGAAGTGAGTACAATTGGAAGAACTCATCATTTCAATCTACTTCGGCTCTATGGATTCTGCTTTGAAAGGCATCTGAGGGCTCTAGTTTATGAGTACATGGAAAATGGCTCACTTGACAAGTATCTGTTTCATGAAAATAAGACCTTAGGATTTGAAAATCTTCATGAGATTGCAGTTGGGACAGCTCGAGGCATTGCTTACCTGCACGAAGAGTGCCAACAGAGAATAATCCACTACGACATTAAACCAGCAAACATCCTCTTGGACAATAACTTCCGTCCTAAGGTTGCTGATTTTGGTCTGGCCAAGCTTTGTAATAGGGAAAATACTCATATAACCATGACAGGAGGAAAGGGGACTCCTGGTTATGCTGCACCAGAGCTTTGGATGCCGTTTCCTATAACTCACAAGTGTGATGTTTACAGCTTTGGAATGATGTTATTTGAGATCATAGGCAGGAGAAGGAATCTCGACATTAAGCTTCCAGAAAGCCAAGAGTGGTTTCCGAGGTGGGTTTGGAAAAAGGTTGATGATGGAGAACTGGAGGAGTTGACAATAGCATGTGGGATAGAGGAAAAAAATAAGGAGATTGCAGAAAGAATGGTTCGGGTAGCTCTTTGTTGTGTTCAGTACAGGCCTGAATCTAGACCCATTATGAGTGTTGTGGTGCAAATGTTGGAAGGTTCAGTGGAAATTCCAGAACCATTGAACCCTTTTCCACACCTGATGGATGAAAATCACCCAGCTCATCCAGTCCAAACTACACAGACCAATTCAAGTCTTGATTCTGGCACTTCTGCAATGGTAAATGGATCTAGCAATTCGTGTGCTACTACTATTATGAGAAAGTATGAGATTGAAATAGCCTCTAACCAGGAATAG	1254	0.4163	MLMFNLRLKNNLPISTCASCFVIIFIGSVAVVRWIDRMRRSIQLIAGKQFRTSTMDKFLNDMEREKPIRFTSQQLMLATDNYNFLLGSGGFGTVYKGTFSDGTIVAVKVLYGSSDKRIEEQFMAEVSTIGRTHHFNLLRLYGFCFERHLRALVYEYMENGSLDKYLFHENKTLGFENLHEIAVGTARGIAYLHEECQQRIIHYDIKPANILLDNNFRPKVADFGLAKLCNRENTHITMTGGKGTPGYAAPELWMPFPITHKCDVYSFGMMLFEIIGRRRNLDIKLPESQEWFPRWVWKKVDDGELEELTIACGIEEKNKEIAERMVRVALCCVQYRPESRPIMSVVVQMLEGSVEIPEPLNPFPHLMDENHPAHPVQTTQTNSSLDSGTSAMVNGSSNSCATTIMRKYEIEIASNQE	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0636	417	Gene3D	Phosphorylase Kinase; domain 1	53	156	-	-
	Glsi13g0636	417	ProSiteProfiles	Protein kinase domain profile.	80	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0636	417	Pfam	Protein tyrosine and serine/threonine kinase	86	350	IPR001245	GO:0004672\|GO:0006468
	Glsi13g0636	417	Gene3D	Transferase(Phosphotransferase) domain 1	157	357	-	-
	Glsi13g0636	417	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	200	212	IPR008271	GO:0004672\|GO:0006468
	Glsi13g0636	417	FunFam	serine/threonine-protein kinase PBS1-like	48	156	-	-
	Glsi13g0636	417	SMART	serkin_6	82	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0636	417	ProSitePatterns	Protein kinases ATP-binding region signature.	86	108	IPR017441	GO:0005524
	Glsi13g0636	417	SUPERFAMILY	Protein kinase-like (PK-like)	59	351	IPR011009	-
	Glsi13g0636	417	PANTHER	OS07G0415500 PROTEIN	21	362	-	-
	Glsi13g0636	417	CDD	STKc_IRAK	86	352	-	-
	Glsi13g0636	417	Coils	Coil	405	417	-	-
	Glsi13g0636	417	FunFam	Putative receptor-like protein kinase	157	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0636	Glsi-ChrGlsi13	25111701	25114364	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0636	29	369	Receptor kinase-like Gene Family	AT5G39030	41.547	2.79e-80	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-Os	Glsi13g0636		PK_Tyr_Ser-Thr	8.1e-47	CL0016