LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0633	ATGTCAACCACAGACGAGGGAACACCAGCTGGGGTTCGAGTTATTATTGGAATAGACGTGGTTGCGATTACGATGAAGATAGCTATTGGATTTGTGGTGTATAAAAGATATGTCGACCGCAGAAGAAGGTTACAGCTTACTGCAGGCAAACAATTTCGGACTTCCACCATGGATAAGTTTCTGAATGATATGGAAAGAGAGAAGCCAATCAGGTTTACCTCACAGCAACTAATGTTAGCAACAGACAACTACAATTTCATGTTGGGGTCAGGAGGTTTTGGAGTTGTCTATAAAGGGATTTTTAGAGATGGAACCATTGTTGCAGTGAAGGTGTTATATGGGAGTTCTGATAAGAGAGTAAAGGAGCAGTTCATGGCTGAAGTGAGTACAATTGGAAGAACTCATCATTTCAATCTACTTCGGCTCTATGGATTCTGCTTTGAAAGGCATCTGAGGGCTCTAGTTTATGAGTACATGGGAAATGGCTCGCTTGACAAGTATCTGTTTCATGAAAATAAGACCTTAGGATTTGAAAAGCTGCATGAGATTGCAGTTGGGACAGCTCGAGGCATTGCTTATCTGCACGAAGAGTGCCAACAGAGAATAATCCACTACGACATTAAACCAGCAAACATCCTCTTGGACAATAACTTCTGTCCTAAGGTTGCTGATTTTGGTCTGGCCAAGCTTTGTAATAGGGAAAATACTTATATAACCAATACAAGAGGAAGGGGGACTCCTGGTTATGCTGCACCAGAGCTTTGGATGTCGTTTCCTATAACTCACAAGTGTGATGTTTACAGCTTTGGAATGATGTTATTTGAGATCATAGGCAGGAGAAGGAATCACGACATTAAGCTTCCAGAAAGCCAAGAGTGGTTTCCGAGGTGGGTTTGGAAAAAAGTTGATGATGGAGAACTGGAGGAGTTGACAATAGCATGTGGGATAGAGGAAAAAAATAAGGAGATTGCAGAAAGAATGGTTCGGGTAGCTCTTTGGTGTGTTCAGTATAGGCCTCAATATAGACCCATTATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTGGAAATTCCAGAGCCATGGAACCCTTTTCACCACCTGATGGATGAAAATCACCCAGCTCATCCAGTCCAAACTACACAGACCAATTCAAGTCTTGATTCTGACTCTTCTGCAATGGTAACTGGATCTAGCAATTCGCGTGCTACTACTATTATGAGAAAGTATGACATTGAAATGGCTTCTAACCAGGAATAG	1260	0.419	MSTTDEGTPAGVRVIIGIDVVAITMKIAIGFVVYKRYVDRRRRLQLTAGKQFRTSTMDKFLNDMEREKPIRFTSQQLMLATDNYNFMLGSGGFGVVYKGIFRDGTIVAVKVLYGSSDKRVKEQFMAEVSTIGRTHHFNLLRLYGFCFERHLRALVYEYMGNGSLDKYLFHENKTLGFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPANILLDNNFCPKVADFGLAKLCNRENTYITNTRGRGTPGYAAPELWMSFPITHKCDVYSFGMMLFEIIGRRRNHDIKLPESQEWFPRWVWKKVDDGELEELTIACGIEEKNKEIAERMVRVALWCVQYRPQYRPIMSVVVKMLEGSVEIPEPWNPFHHLMDENHPAHPVQTTQTNSSLDSDSSAMVTGSSNSRATTIMRKYDIEMASNQE	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0633	419	MobiDBLite	consensus disorder prediction	372	399	-	-
	Glsi13g0633	419	SUPERFAMILY	Protein kinase-like (PK-like)	61	353	IPR011009	-
	Glsi13g0633	419	FunFam	Putative receptor-like protein kinase	159	360	-	-
	Glsi13g0633	419	Gene3D	Phosphorylase Kinase; domain 1	54	158	-	-
	Glsi13g0633	419	ProSiteProfiles	Protein kinase domain profile.	82	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0633	419	Pfam	Protein tyrosine and serine/threonine kinase	87	352	IPR001245	GO:0004672\|GO:0006468
	Glsi13g0633	419	Gene3D	Transferase(Phosphotransferase) domain 1	159	360	-	-
	Glsi13g0633	419	FunFam	serine/threonine-protein kinase PBS1-like	50	158	-	-
	Glsi13g0633	419	SMART	serkin_6	84	352	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0633	419	ProSitePatterns	Protein kinases ATP-binding region signature.	88	110	IPR017441	GO:0005524
	Glsi13g0633	419	PANTHER	OS07G0415500 PROTEIN	53	365	-	-
	Glsi13g0633	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	202	214	IPR008271	GO:0004672\|GO:0006468
	Glsi13g0633	419	MobiDBLite	consensus disorder prediction	375	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0633	Glsi-ChrGlsi13	25069506	25071013	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0633	12	371	Receptor kinase-like Gene Family	AT5G39030	39.674	1.71e-80	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-Os	Glsi13g0633		PK_Tyr_Ser-Thr	2.3e-47	CL0016