Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0631 ATGGAGTGGGACAGCAATTCGGATCTCAGCGGGGACGAGGATGAAGGTTTCATGCTCAACGACGGTGGCCCTCTTCCCTTCCCTGTTGAGAGCTTGCTCCAAACGGCGCCCTGTGGTTTCGTCGTCACTGATGCACTCGAGCCTGACCATCCCATCATATATGTCAATACTGTCTTCGAGATGATCACTGGGTATCGGGCAGAGGACGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTAGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAGTTTCAGAAATTAGGAGATGCCTCGAGGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCAGTGATGAACAGATTGCAGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCGCAGAGGCAAACATTGATCTTGGTCCCGTTCCAGGTTCGACAATTAAGGAATCTGCTAAATTATCTGATCGGTTTCGTTCTTCTGTCCTTGCATCATTGCGTCCTCTTCCTGGGGGGGACTGTAATGTAGCTCGTGGAGTTTGTGGGATATTCCAGTTGAGTGATGAGGTACTGTCTCTGAAGATACTTGCTCGGTTAACTCCAAGAGATATTGCATCAGTTAGCTCTGTCTGTAGGCGATTGTATGAGCTATCAAGAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGTAGCGAGACAACACATGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTAGGTTGGCAAGGGAATTGACAACTCTTGAAGCAGCAGCATGGAGAAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTCAATTCCAGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGCCGGTGGGGCCACACACTTTCTTGTGTTAACGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTGTTGGACCTGGATGCAAAGCCTCCGACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATAGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTCTTGAGCGACACATTCCTCCTTGATCTCTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTGACGTGGACCCCGCCTTCTCGTCTAGGCCACACACTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGGCTTCGCTCCAGTGATGTATTCACAATGGATCTAAGTGACGAGGAACCATGTTGGAGATGTGTAACTGGGAGTGGAATGCCCGGTGCTGGGAATCCCGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCCGGAGGAAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCACTCTGCCTCGCAGCTTTACATTCTGGACCCAACTGATGAAAAACCTACGTGGAGAATTCTAAACGTGCCTGGGCGCCCTCCGAGATTTGCTTGGGGACATAGTACTTGTGTTGTTGGAGGGACAAGAGCTATCGTTTTGGGTGGTCAAACTGGAGAGGAATGGATGCTAAGTGAGCTCCATGAGCTTTCACTTGCAAGTTCTCTCATCTAA 1836 0.4869 MEWDSNSDLSGDEDEGFMLNDGGPLPFPVESLLQTAPCGFVVTDALEPDHPIIYVNTVFEMITGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPVMNRLQLTPIYGDDETITHVIGIQFFAEANIDLGPVPGSTIKESAKLSDRFRSSVLASLRPLPGGDCNVARGVCGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYELSRNEDLWRMVCQNAWGSETTHVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRLRSSDVFTMDLSDEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSLI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0631 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Glsi13g0631 611 CDD PAS 36 146 IPR000014 -
Glsi13g0631 611 FunFam Adagio protein 1 196 243 - -
Glsi13g0631 611 FunFam Putative LOV domain-containing protein 272 476 - -
Glsi13g0631 611 SUPERFAMILY Galactose oxidase, central domain 281 596 IPR011043 -
Glsi13g0631 611 Gene3D - 196 243 - -
Glsi13g0631 611 FunFam Putative LOV domain-containing protein 477 610 - -
Glsi13g0631 611 Pfam Galactose oxidase, central domain 295 345 - -
Glsi13g0631 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Glsi13g0631 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Glsi13g0631 611 Gene3D PAS domain 22 158 - -
Glsi13g0631 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 608 - -
Glsi13g0631 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Glsi13g0631 611 SUPERFAMILY F-box domain 191 260 IPR036047 GO:0005515
Glsi13g0631 611 CDD F-box_AtADO-like 198 244 - -
Glsi13g0631 611 FunFam Adagio protein 1 27 158 - -
Glsi13g0631 611 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Glsi13g0631 611 SMART fbox_2 202 243 IPR001810 GO:0005515
Glsi13g0631 611 Pfam Galactose oxidase, central domain 359 406 - -
Glsi13g0631 611 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Glsi13g0631 611 Gene3D - 499 609 IPR015915 GO:0005515
Glsi13g0631 611 Gene3D - 272 498 IPR015915 GO:0005515
Glsi13g0631 611 Pfam PAS domain 37 147 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0631 Glsi-ChrGlsi13 25036789 25044783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0631 31 190 AGC Kinase Gene Family AT5G58140 28.395 3.40e-15 77.4