Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0628 ATGGAAGGTCCACCGGATCCGGTGGCTAACACCGCCGGGGAAATACTAAGCAAGAATGCATTGAAGCGGGAACTCAAGAACAGACAGAGAGAAGAGGAAAGAAGGCGCAAGGAGGAGGAGAAAGCCAAAAGGGCAGCTGAAATGCAAAGTGCTCAATCTAACAGACCTGCATCTGTTGAGGATGAAGATATGGACCCAACACAATACCACGAGAATAGACTAAAATATCTTGCAGCTCAGAAGGCAGAAGGGAATAACTCTTATCCACACAAATTCTCAGTCTCTATGTCTATCAATGATTACATTGACAAATATGGAGGCTTAAATGATGGAGAGCATCTTGAGCATATAATTGTTTCTTTAGCTGGCCGAATCATGCACAAACGCTCTTCAGGTGCGAAGCTAGTCTTTTATGATCTGCATGGTGGTGGTTTCAAGGTCCAGGTTATGGCTGATGCAAGGCATTCTGACTTGGATGAGGCTGAATTTTTTAAATGCCATTCTAATGTAAAGCGTGGTGATATTATCGGTGTCACCGGGTTTCCAGGGAAAAGTAAGAAAGGAGAGCTCAGTATTTTCCCCAAGACTTTTGTAGTGTTGTCTCATTGTCTACATATGATGCCAAGACAAAAATCTGCGGCTGCCGCTGATAATGCAAATTTGAAGAAAAATATATGGGCACCAGGAAGTGCTAGGAACCCAGAAATGTACATTTTAAAGGATCAGGAAACAAGATATCGTTTACGGCATTTGGATCTGATGCTGAATCCAGAGGTTCGAGAAATATTTAAGACCAGATGTAAAATCATTTCTTACATTAGAAGGTTCCTTGATGACCTTGATTTCCTGGAGGTTGAAACACCAATGATGAACATGATTGCTGGAGGAGCAGCTGCCCGTCCATTTGTAACTCATCACAATGAACTTAATATGAGATTATACATGCGAATTGCACCAGAACTCTACCTTAAGGAGCTGGTTGTTGGTGGGTTAGACCGCGTTTATGAAATTGGAAAACAATTTAGAAATGAGGGTATAGATTTGACTCATAATCCTGAGTTCACTACTTGTGAATTCTATATGGCTTATAAGGACTATAACGACTTAATGGAGATTACAGAGCAAATGTTGAGTGGCATGGTTAAGGAACTTACAAAAGGAAGCTATAAAATCAAATATCATGCAGAAGGTTTTGATAAGGATCCAATTGAGATTGACTTTACTCCACCTTTCAGAAGGATTGACATGATAGAAGAACTGGAGAAGATAGCAGGCCTCAGTATTCCCAAGGACTTGTCCAGTGAGGAAGCTAATCAATATTTGAAGGATGCGTGCTTGGAGTATGACATTAAATGTCCTCCTCCGGAAACAACAGCTCGTCTGTTGGATAAACTTGTAGGGCACTGCTTGGAAGAAACTTGTGTGAATCCTACATTCATCATAAACCATCCCGAGATAATGAGTCCTCTGGCAAAGTGGCACAGATCAAAACCAGGACTGACTGAACGTTTCGAATTGGTTGTTAATAAGCATGAGCTTTGCGACGCATACACTGAATTGAATGACCCTGTAGTGCAACGGCACCGATTTGCTGAACAACTCAAGGACCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACCGCTCTGGAGTATGGTTTGCCACCAACTGCTGGTTGGGGTATGGGCATAGATAGGCTGATCATGTTGCTGACAGATTCCCAGAATATTAAGGAGGTTCTTCTTTTCCCATCCATGAAACCTCAAGATTGA 1788 0.4195 MEGPPDPVANTAGEILSKNALKRELKNRQREEERRRKEEEKAKRAAEMQSAQSNRPASVEDEDMDPTQYHENRLKYLAAQKAEGNNSYPHKFSVSMSINDYIDKYGGLNDGEHLEHIIVSLAGRIMHKRSSGAKLVFYDLHGGGFKVQVMADARHSDLDEAEFFKCHSNVKRGDIIGVTGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKKNIWAPGSARNPEMYILKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMEITEQMLSGMVKELTKGSYKIKYHAEGFDKDPIEIDFTPPFRRIDMIEELEKIAGLSIPKDLSSEEANQYLKDACLEYDIKCPPPETTARLLDKLVGHCLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELVVNKHELCDAYTELNDPVVQRHRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGMGIDRLIMLLTDSQNIKEVLLFPSMKPQD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0628 595 FunFam Lysine--tRNA ligase 237 595 - -
Glsi13g0628 595 SUPERFAMILY Class II aaRS and biotin synthetases 241 592 IPR045864 -
Glsi13g0628 595 CDD LysRS_core 256 593 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 FunFam Lysine--tRNA ligase 66 209 - -
Glsi13g0628 595 CDD LysRS_N 118 253 IPR044136 GO:0000166
Glsi13g0628 595 MobiDBLite consensus disorder prediction 1 64 - -
Glsi13g0628 595 PRINTS Lysyl-tRNA synthetase signature 476 492 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 PRINTS Lysyl-tRNA synthetase signature 341 358 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 PRINTS Lysyl-tRNA synthetase signature 294 310 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 PRINTS Lysyl-tRNA synthetase signature 323 336 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 PRINTS Lysyl-tRNA synthetase signature 278 288 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Glsi13g0628 595 Gene3D - 67 209 IPR012340 -
Glsi13g0628 595 MobiDBLite consensus disorder prediction 19 46 - -
Glsi13g0628 595 Coils Coil 18 54 - -
Glsi13g0628 595 SUPERFAMILY Nucleic acid-binding proteins 64 208 IPR012340 -
Glsi13g0628 595 Pfam OB-fold nucleic acid binding domain 119 196 IPR004365 GO:0003676
Glsi13g0628 595 Hamap Lysine--tRNA ligase [lysS]. 72 594 IPR002313 GO:0004824|GO:0005524|GO:0006430
Glsi13g0628 595 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 268 593 IPR006195 -
Glsi13g0628 595 Pfam tRNA synthetases class II (D, K and N) 241 591 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi13g0628 595 PANTHER LYSYL-TRNA SYNTHETASE 16 595 - -
Glsi13g0628 595 Gene3D Bira Bifunctional Protein; Domain 2 237 595 IPR045864 -
Glsi13g0628 595 NCBIfam lysine--tRNA ligase 230 594 IPR002313 GO:0004824|GO:0005524|GO:0006430
Glsi13g0628 595 PIRSF LysRS2 6 595 IPR034762 GO:0004824|GO:0005524|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0628 Glsi-ChrGlsi13 25003001 25010413 Dispersed/Wgd