Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0601 ATGCAATGTTTCATAAGCGTTGAACTTACCTTTTGGTTTGGTTCCGGCACCCCAATTCTATTGCATCCAAGGAGGATTCATATCATAACCCACATGAGTAGGCTTTATGCTAGACGTGTAGAATCAGTGTATGAACTGGTTGAATGTTGTATAACCCACCAGGATTGCATCCAAGGAAGAAGATTGAACTTTTGCAAGTACCGGCAAAATTTGTTTTTGTTAGTGGTAAAGCTGCAATTACGGTCAGTTCTCCTAATTGACAATTCAAGCGATAAAACAACTGCTGCTTCAAACAATTTCTTCCTTTTGACTACATATGATAATACTGTCAGTGGCAAATTCTCTTTACCAAACCTTGAAGGAGAATTCATTTTGACTTTTGACGAGACAGAGATTGAGAAGAATCTAAATAATAACAGAGGGTCCAGAAAGTCCAGTCATTCAAAGGCAGAAACTGAGTCAAAGCTGTGCTCATCATTGAGATTCAAAACAAGTCGCCGAAAATCCCAAGGGAAGAAGCACAAATTGAAATCAAAATCTCATGCACACAGAGTTGGTGCAAATATATCAAGGACAGCCACTGACGCTTCTAACAAGGACCCGAGCAAGGGTTCTTCAATAAAAAAATTGATTATTAGACAAAAACTTCATAAAACCGATGGAAAATCATCACAAAAGCTCTCTTCATCAAAGCTACTAGGTGAAAAAATTTCTCTTAGTTCTAGGAAAGAGGGGAAAGATGTTGATGGGGAGGAAAAAATTCAAAAACTTAAAAAGAGAAGGAGAAATAAGAATAGGCAAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGCGGAGAATAAGGTATCTTTTAATCAAAATGAAGCTGGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTGCAAAGAGCAATGAAACAGATTTTAAAATGTAAGCTTAGTATTCGTGATGCAATTCACCAGTTGGATTCTCTTAGTTCAGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAAATGTCTTGATCCTCCTTTGGACACGGAAAATATTCCTCCTGGAGACCAGGGCTGGTTCTGCAAGCTTTGTGAATGTAAGATGGAAATACTGGAGGCAATGAATGCCCATCTTGGGACTCACTTCTCCTTGGACAGCACATGGCAGGACGTATTTAAGGAAGAAGCTTCTATACCTGATGGTGATACTAGATTACTGAATCCAGAAGAAGAATGGCCATCGGATGATTCTGATGACGATGATTATAATCCAGAGAGGAGAGAAGATAGCTATAGTATCAGCCCGGAAGGAACTGATGATAATGCATCTGATGATTTAAACAGTTCTACCAGTCTATGGTCTTCAGATGGTGTATATTCTCGAGGAAAGGAAGATATTGGCCATGAATTTTTCTCTGTCAATAGCTGCATAGATTCTGATGAATCTGGAGAGATAGCATGTGGCCGAAGGCAGCGAAAAGCAGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAAGATGCTCCTGCATTTGAACAAGTTAGCGAAGACGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAAATAAGGAGTCTGATGCTGTTAATACTCTCATGACTCTCCATGAATGTGAAAATAAATATCCCAGTAATGAGCAGAACATGATAGAAGAAGTTTCTTCTGACATCCAAATTAGAAGGCCTTGTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGCTTTTGCAGAGAATGAACTTCCTTCACGATCTGTAAAGGAGGGTCTTTCAAAAGAGTTGGGACTGGATGCTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAAGCAAGCAGAAGGAGCAGAACAGCTTCAAAGTTTCACTTCCAGAACCTCAAAGGATTCTAGATTACAAAATCTGGCAAAAGAGCATTTGACATCAAAAGAATCCTCAAAATTGACTTTGACTCGTTGCCAGAAGCATGTTAAAAATGTCAGCCGTAGAAAGCACTTAAAGTCATCTAGCCACAGTCCTTTGAAGAAAAGGGAACAAGAAATATCTCCCCTTCAATCAGGAGAAAACGGCAATAAGGACTATGTGGAGTTCAATGATGATGTGAGCTTGAAGAAACTGTTGAAAGCAAAAAGAAGAAAGGTAAATTATATATTTGAAGGAGACTCAGAGGCAGCAGAATTGGAGTTAGAAAGACTTGGCAAAGTGAAGAATAGACTACACAGTATGAAGCAAAAATTACTTGAAATACAAAATTACAGAGCAAAGGTTGATTCAGATGAACCATCAGTTATATTTGTACCCATAGCTGAGTTAAGAGAAAAAAGTTGA 2535 0.3905 MQCFISVELTFWFGSGTPILLHPRRIHIITHMSRLYARRVESVYELVECCITHQDCIQGRRLNFCKYRQNLFLLVVKLQLRSVLLIDNSSDKTTAASNNFFLLTTYDNTVSGKFSLPNLEGEFILTFDETEIEKNLNNNRGSRKSSHSKAETESKLCSSLRFKTSRRKSQGKKHKLKSKSHAHRVGANISRTATDASNKDPSKGSSIKKLIIRQKLHKTDGKSSQKLSSSKLLGEKISLSSRKEGKDVDGEEKIQKLKKRRRNKNRQRNNVDLDDASRLQRRIRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKCKLSIRDAIHQLDSLSSVGSIEDSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKLCECKMEILEAMNAHLGTHFSLDSTWQDVFKEEASIPDGDTRLLNPEEEWPSDDSDDDDYNPERREDSYSISPEGTDDNASDDLNSSTSLWSSDGVYSRGKEDIGHEFFSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPAFEQVSEDEDWGPGKRKRRNKESDAVNTLMTLHECENKYPSNEQNMIEEVSSDIQIRRPCFRIPHDAVEKLRQAFAENELPSRSVKEGLSKELGLDAEKVSKWFKNARYLALKTRKQAEGAEQLQSFTSRTSKDSRLQNLAKEHLTSKESSKLTLTRCQKHVKNVSRRKHLKSSSHSPLKKREQEISPLQSGENGNKDYVEFNDDVSLKKLLKAKRRKVNYIFEGDSEAAELELERLGKVKNRLHSMKQKLLEIQNYRAKVDSDEPSVIFVPIAELREKS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0601 844 CDD PHD_PRHA_like 366 418 IPR045876 -
Glsi13g0601 844 ProSiteProfiles 'Homeobox' domain profile. 618 678 IPR001356 GO:0003677
Glsi13g0601 844 MobiDBLite consensus disorder prediction 136 156 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 161 184 - -
Glsi13g0601 844 Pfam PHD-finger 366 421 IPR019787 -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 185 204 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 453 504 - -
Glsi13g0601 844 ProSitePatterns Zinc finger PHD-type signature. 367 418 IPR019786 -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 241 273 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 569 588 - -
Glsi13g0601 844 Coils Coil 254 274 - -
Glsi13g0601 844 ProSiteProfiles Zinc finger PHD-type profile. 364 421 IPR019787 -
Glsi13g0601 844 SMART PHD_3 366 419 IPR001965 -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 569 589 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 729 762 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 489 504 - -
Glsi13g0601 844 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 142 843 - -
Glsi13g0601 844 SUPERFAMILY FYVE/PHD zinc finger 358 424 IPR011011 -
Glsi13g0601 844 Gene3D - 620 688 - -
Glsi13g0601 844 MobiDBLite consensus disorder prediction 241 256 - -
Glsi13g0601 844 FunFam pathogenesis-related homeodomain protein-like 358 418 - -
Glsi13g0601 844 FunFam pathogenesis-related homeodomain protein 620 684 - -
Glsi13g0601 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 415 IPR013083 -
Glsi13g0601 844 Pfam Homeodomain 629 673 IPR001356 GO:0003677
Glsi13g0601 844 MobiDBLite consensus disorder prediction 136 207 - -
Glsi13g0601 844 SUPERFAMILY Homeodomain-like 621 684 IPR009057 -
Glsi13g0601 844 CDD homeodomain 621 681 IPR001356 GO:0003677
Glsi13g0601 844 SMART HOX_1 620 682 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0601 Glsi-ChrGlsi13 24650422 24661677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0601 269 680 Homeobox Transcription Factor Family AT4G29940 60.900 1.18e-159 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Glsi13g0601 Homeodomain 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0601 13 24650422 24661677 Glsi13g0601 13 24650422 24661677 ECH