Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0600 ATGTCTTCGTGCTTAAGCGGAGCTGGCGGAAGAACTTATGGGTTCGATTTCGATTTTGTGAAATCTCCATCTATTACATCGACCCGAACTTCACAGACATCTTCTCCTTCTTCAACTATCTCTGAATCGAGCAATTCCCCACTTGCAATCTCCACCCGAAAACCTCGAACTCCCCGAAAGCGACCAAACCAAACTTACAATGAAGCTGCTGCCCTGCTTTCCACTGCCTATCCGAATCTCTTCTCCACCGATAGCCTAAAAGACCCAGGCAAATTCACCAGACCAACTGATGCTTTTCTGGACGAACCTGCGGAGTTGTTTTTGCCTTTTAGAGTCTTCGATGGCTCCTCTTTCCTACTCCACCAACCAATCCAACATAAATCCACTTTTTCAATGGAGCCCAAAGTGATGAATCTACAAGAAAAATTATGCCAGAGTCCAGGGGAGATTAGCTCCCGAGTGCAATCACTGGAATTGGAGGACGATTGTCAAGAAGATTTCGATGCTGAATCGATTCTCGATGAGGAAATCGACGAGGGAATAGATAGCATCATGGGGTGCAGGGCAGAAGAAGACTCGAATGGCGCTTCTCGTCACAGCGAGGAAGTGAATCGTTTGAGTATGAATCCCACGGGATTTGGATTTGGCGGGAAATTCGATTCCCGGCTGGGGTTTAGAGCTCTCCGGCACGTTGATGAAGGGAACTGGTGGAATTTTCCTACCACCGTTAATATAGCGGATATCTCCCCGAGAATCAATAAGCCTCCGGCATCGTCGTTGGCGGCGGAGAATAAGAAGAATAAGAAGAAGAAGAAGAAGGTGGATAAAGCGAGCTTGGAATCGAAGAGCTCAGAATTACCGAAAGAAAATTCGATTCCAAAATCGAATCCGGCTTTGCTGTTGAAACTGAACTACGACGATATTTTGAATGCTTGGTCCGACCGGGGTTCACCGTTCGCCGACGGAAGTCGGAGCTCCGACGTACCGGGAAATGATGCCACAGCTCGGCTGGCGCTGATAGATTTGTTGACGGACAACGGAGGAGTGAGAGAAGCTAGTGTGTTGCGCTACAAAGAAAAGCGGCGCACGCGGCTCGTCTCTAAGAAGATCAGGTATCAGGTCAGAAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTGAGGAGGGCCAATTCTAGCTCAAATACACAAAGATGA 1206 0.4826 MSSCLSGAGGRTYGFDFDFVKSPSITSTRTSQTSSPSSTISESSNSPLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNLFSTDSLKDPGKFTRPTDAFLDEPAELFLPFRVFDGSSFLLHQPIQHKSTFSMEPKVMNLQEKLCQSPGEISSRVQSLELEDDCQEDFDAESILDEEIDEGIDSIMGCRAEEDSNGASRHSEEVNRLSMNPTGFGFGGKFDSRLGFRALRHVDEGNWWNFPTTVNIADISPRINKPPASSLAAENKKNKKKKKKVDKASLESKSSELPKENSIPKSNPALLLKLNYDDILNAWSDRGSPFADGSRSSDVPGNDATARLALIDLLTDNGGVREASVLRYKEKRRTRLVSKKIRYQVRKVNADRRPRMKGRFVRRANSSSNTQR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0600 401 Pfam CCT motif 350 392 IPR010402 GO:0005515
Glsi13g0600 401 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Glsi13g0600 401 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 395 - -
Glsi13g0600 401 MobiDBLite consensus disorder prediction 248 293 - -
Glsi13g0600 401 MobiDBLite consensus disorder prediction 25 52 - -
Glsi13g0600 401 MobiDBLite consensus disorder prediction 25 63 - -
Glsi13g0600 401 Coils Coil 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0600 Glsi-ChrGlsi13 24644557 24647124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0600 298 392 C2C2-CO-like Transcription Factor Family AT1G25440 45.536 2.49e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi13g0600 CCT 8.8e-16 CL0281