Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0596 ATGGAGAACATCGGGGAGGAGTACAAGCATTACTGGGAGACCAACATGTTCTTCCAAAACGAAGAGTTCGACAGCTGGGGACTGGACGAGGCCATCTCCGCCTACTACGATTCCAGCTCGCCCGACGGCGCCGTCGCTTCATCCACCCCCTCCAAGAACATTGTCTCCGAGAGAAATCGCAGGAAGAAACTCAACGAAAGGCTTTTCGCTCTGAGAGCCGTCGTCCCCAATATTAGCAAGATGGATAAGGCATCGATAATAAAGGATGCTATAGAGTATATAGAGCAGTTGCACGAGCAAGAGAAGAGCATTGAAGCAGAGATAATGGAGCTTGAATCTGGGAAGATGATGACGACCACGGAGAATAATCCAAGGTATAATCATGGGTTCGAGCAGGACCTGCCTGTGCTTCTCAGGTCAAAGAAGAAGAAAACAGAGCAGCAGCAGCTTTATGATTCTCTCACCTCGAGAAATTCCCCAATTGAAGTCCTAGAGCTCAGGGTAACATACATGGGAGAGAAGACAGTGGTGGTGAGCTTGACATGCAGTAAAAGGACAGACACGATGGTGAAACTGTGCGAAGTTTTCGAATCTTTGAACGTCAAGATTATTACAGCCAACATCAACAGTTTCTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAGAAGAAGAAGAGAAAGATCTTTTGCAGATAAAAATCCAAAGAGCCATTGCAGCTTTTAATGATATTCAAAGCCATATGAGCTTATGA 756 0.4603 MENIGEEYKHYWETNMFFQNEEFDSWGLDEAISAYYDSSSPDGAVASSTPSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIEQLHEQEKSIEAEIMELESGKMMTTTENNPRYNHGFEQDLPVLLRSKKKKTEQQQLYDSLTSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLNVKIITANINSFSGRLLKTVFIEAEEEEKDLLQIKIQRAIAAFNDIQSHMSL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0596 251 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 236 - -
Glsi13g0596 251 MobiDBLite consensus disorder prediction 39 58 - -
Glsi13g0596 251 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Glsi13g0596 251 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 117 - -
Glsi13g0596 251 SMART finulus 54 103 IPR011598 GO:0046983
Glsi13g0596 251 Gene3D - 46 114 IPR036638 GO:0046983
Glsi13g0596 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Glsi13g0596 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 114 IPR036638 GO:0046983
Glsi13g0596 251 Coils Coil 87 114 - -
Glsi13g0596 251 MobiDBLite consensus disorder prediction 40 54 - -
Glsi13g0596 251 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0596 Glsi-ChrGlsi13 24618756 24623835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0596 1 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.444 2.16e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g0596 HLH 3.7e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0596 13 24618756 24623835 Glsi13g0596 13 24618756 24623835 ECH