Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0587 ATGGATGGTGTATTCTTGATGGGTAAAGAGGATGTTAAGGGAGGAGCAGTGGTTCCTGAATCTGTGTTGAAAAAGCAGAAGAGGGATGAGGAATGGACTCTGGCAAAAAAACAGGAACTTGATGCTGCAAAGAAGAAGAGATCTGAAACACGGAAACTGATTTATAACAGAGCCAAACTGTATGCAAAGGAATATGATGAGCAGCAAAAGGAGCTGATTAGATTGAAGCGTGAAGCAAAGCTTAAGGGTGGGTTTTATGTGGACCCAGAAGCCAAGCTGTTGTTTATTATCAGGATCCGTGGTATCAATGCTATGCACCCAAAAACTAGGAAGATTTTGCAGCTTCTGCGTCTTAGACAGATATTTAATGGCGTCTTTCTCAAAGTTAACAAAGCAACTATGAATATGCTGCGCAGGGTTGAGCCTTTTGTTACTTATGGGTACCCTAATTTGAAGAGCGTCAAGGAACTGATCTACAAGAGGGGTTTTGGGAAAGTTAAGAACCAGAGAATTCCTCTGACAGACAACTCTATCGTCGAGCAGACTTTGGGGAAGCATGGGATTATCTGCGTGGAGGATCTGATCCATGAGATCTTGACTGTCGGACCACACTTCAGAGAGGCGAATAACTTCCTGTGGCCATTCAAGCTAAAGGCTCCTCTTGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCCGGCAACCGTGAAGATTATATTAATGAGCTTATTAGAAGGATGAATTAG 759 0.4256 MDGVFLMGKEDVKGGAVVPESVLKKQKRDEEWTLAKKQELDAAKKKRSETRKLIYNRAKLYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPFVTYGYPNLKSVKELIYKRGFGKVKNQRIPLTDNSIVEQTLGKHGIICVEDLIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0587 252 FunFam 60S ribosomal protein L7 198 252 - -
Glsi13g0587 252 Pfam Ribosomal protein L30p/L7e 94 144 IPR016082 -
Glsi13g0587 252 Pfam Ribosomal L30 N-terminal domain 18 89 IPR012988 -
Glsi13g0587 252 Gene3D - 198 252 IPR036919 -
Glsi13g0587 252 Gene3D - 93 197 IPR036919 -
Glsi13g0587 252 SUPERFAMILY Ribosomal protein L30p/L7e 93 252 IPR036919 -
Glsi13g0587 252 ProSitePatterns Ribosomal protein L30 signature. 112 144 IPR018038 -
Glsi13g0587 252 CDD Ribosomal_L7_archeal_euk 93 252 IPR035808 -
Glsi13g0587 252 NCBIfam 60S ribosomal protein uL30 19 252 IPR005998 GO:0000463|GO:0003735|GO:0022625
Glsi13g0587 252 Coils Coil 58 82 - -
Glsi13g0587 252 PANTHER 60S RIBOSOMAL PROTEIN L7 16 252 IPR039699 -
Glsi13g0587 252 FunFam 60S ribosomal protein L7 93 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0587 Glsi-ChrGlsi13 24482544 24485667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0587 11 252 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.058 7.57e-152 421