Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0580 ATGAGTTTGTCGAACGGTTCACCCCGCCGCCAGAATGATATAGAGGCCGGGACAAGCCGCTCCGGCGACTTTGATGACGGGGAAGAAGGTCCTTTTGATCCATTTGATATTACCAGCACAAAGAATGCTTCCATTGAACGCCTCAAGCGTTGGAGGCAAGCGGCTCTTGTGCTTAATGCTTCTCGTCGGTTCCGTTACACCTTGGACTTGAAAAAGCAAGAAGAGAAGACACAAACATTAAGGAAGATTAGGGCGCATGCACAAGCCATTAGGGCTGCGTATCTTTTCAAAGAATCTGGGCAGAGTGTGAATGGAATCACAAAACCTCCCCCACCTCCGGGTGACTTTCCAATTGGACCAGAGCAACTTGCTTCAATTTCAAGGGATCATAAAATTGATGTCCTGCAGCGACATGGAGGGGTTAAAGGGCTGGCAGATTCGTTGAAAACCAATTTAGAGAAGGGGGTTCCTGGTGACGATGCAGACTTGGTAAAACGGAGGAATGTGTTTAGTTCAAACACTTATCCTCAAAAGAAAGGAAGGAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATATTAATGGTAGCAGCAGCGGCTTCATTGGCACTGGGAATAAAATCTGAGGGTATCAAGGAAGGGTGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATAGTTGTTACAGCTATAAGTGATTATAAGCAGTCCCTTCAGTTTAGAGATCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTATTAGAGGTGGTAGAAGAGTTGAGATCTCAATATATGATATTGTTGTTGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACTGGTCACTCCCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTCATAAGGATTCTAGGGACCCTTTTCTGATGTCTGGATGTAAAGTCGCAGATGGCAGTGGTACTATGCTGGTTACTGGTGTTGGTATTAATACTGAGTGGGGGCTTCTAATGGCTAGTATATCAGAAGAAACTGGGGAAGAAACACCCTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGGATTGTTGGACTCTCTGTAGCTGTTGCTGTTCTGATTGTGCTACTCGTCAGATATTTTTCTGGGCATACTGAAAACTCAAATGGAACTCTTCAATTTAAGGCGGGCAAGACAAAAATCGGTGATGCTATTGATGGAACAATTAAGATAATCACAGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCTGTTACCTTAACACTTGCCTACTCGATGAGAAAAATGATGGCAGATAAGGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGTTCCGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTTTGAATCAGATGACTGTGGTTGAGGCTTACATTGGTGGGAAGAAGATGGATCCTCCTCACACCAAGTCAGAGCTTTCTGCTACGCTCTGCTCTTTGCTTGTTGAAGGTGTTGCACAAAACACCAATGGCAGTGTTTATGTACCTGAGGGTAGTAATGATGTTGAGGTCTCTGGGTCACCTACAGAAAAGGCAATTTTACATTGGGGAATCAAGTTAGGGATGAATTTTGAGGCTGTCAGATCAGAATCATCAATTATACATGTCTTTCCATTCAATTCAGAGAAAAAACGTGGGGGAGTTGCACTTCGGATGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAAATAGTACTAGCCTGTTGTACAACCTATATGGATGCAAATGGCCAGTTAGTAGAGATGGATGAAGAGAAGATGCAATTTTTTAAAACAGCTATTGAAGACATGGCTACTACTAGTCTGCGTTGTGTTGCTATTGCATATAGATCATATGAAATCAAGAATGTTCCAACTAGTGAAGAAGAACTTACTCACTGGTCATTACCGGACGATGGTCTTGTTTTACTGGCTATCGTTGGTCTGAAGGATCCTTGTCGACCTAGTGTGAAGAATGCAGTGCAACTTTGCCAGAAAGCTGGAGTGAAGGTTCGAATGGTCACTGGCGACAATGTGGCAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTTCTTTCATTGGAAGATGCCACTGAGCCAAACATTATTGAAGGAAGAGCATTTCGTGCCTTGACAGATACTCAGAGAGAAGACATTGCTGAAAGGATATCGGTCATGGGGCGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACGGGGGATGGAACTAATGATGCTCCTGCACTGCACGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGGACGGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGACGACAATTTTGCTTCTGTTGTCAAGGTTGTCAGATGGGGACGATCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACGGTCAATGTGGCAGCTCTCGTTATTAATGTTGTTGCTGCAGTTTCCACTGGTGATGTCCCACTAAATGCAGTGCAGCTTCTCTGGGTAAATCTAATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTAATGAATCGGCCCCCAGTGGGTAGAAGAGAACCTCTGATAACAAATATTATGTGGAGGAATTTGCTCATACAGGCAATGTACCAGGTGTCTGTCTTGCTTGTACTCAATTTCCAAGGTAGGAGCTTGCTGGGTCTGAAACATGACAACAATGACCATGCTATCAAAGTGAAGAACACTTTAATATTTAATGCATTTGTTCTTTGTCAAATCTTTAATGAATTTAACGCTCGGAAGCCGGATGAATATAACATATTCAAGGGAATCACAAGAAACTACCTCTTTATGGGGATAGTGGGATTAACTCTTGTGTTTCAGATTATCATCATTTTCTTTTTGGGGAAGTTCTTTTCAATAGTCAAACTTAATTGGAAGCATTGGCTCATTTCTGTCGTCATTGGATTCATAAGCTGGCCGCTTGCCGTGGTTGGGAAGTTGATTCCTGTACCAGAAACTCCCATCAGTAACTATTTTACAAGATGTTTCCGGCGAAGATCTTCAAGAAGGAAGGAATCTGAGGCTGCTTCTCAATAG 3246 0.4313 MSLSNGSPRRQNDIEAGTSRSGDFDDGEEGPFDPFDITSTKNASIERLKRWRQAALVLNASRRFRYTLDLKKQEEKTQTLRKIRAHAQAIRAAYLFKESGQSVNGITKPPPPPGDFPIGPEQLASISRDHKIDVLQRHGGVKGLADSLKTNLEKGVPGDDADLVKRRNVFSSNTYPQKKGRSFLMFMWDACKDLTLIILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSRDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEETGEETPLQVRLNGVATFIGIVGLSVAVAVLIVLLVRYFSGHTENSNGTLQFKAGKTKIGDAIDGTIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYIGGKKMDPPHTKSELSATLCSLLVEGVAQNTNGSVYVPEGSNDVEVSGSPTEKAILHWGIKLGMNFEAVRSESSIIHVFPFNSEKKRGGVALRMPDSQVHIHWKGAAEIVLACCTTYMDANGQLVEMDEEKMQFFKTAIEDMATTSLRCVAIAYRSYEIKNVPTSEEELTHWSLPDDGLVLLAIVGLKDPCRPSVKNAVQLCQKAGVKVRMVTGDNVATAKAIALECGILLSLEDATEPNIIEGRAFRALTDTQREDIAERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMNRPPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFQGRSLLGLKHDNNDHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGITRNYLFMGIVGLTLVFQIIIIFFLGKFFSIVKLNWKHWLISVVIGFISWPLAVVGKLIPVPETPISNYFTRCFRRRSSRRKESEAASQ 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0580 1081 Gene3D - 43 98 - -
Glsi13g0580 1081 SFLD p-type atpase 463 841 IPR044492 -
Glsi13g0580 1081 Gene3D - 163 357 - -
Glsi13g0580 1081 ProSitePatterns E1-E2 ATPases phosphorylation site. 483 489 IPR018303 -
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 491 689 - -
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 683 834 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 682 693 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 704 714 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 789 808 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 813 825 - -
Glsi13g0580 1081 PRINTS P-type cation-transporting ATPase superfamily signature 305 319 - -
Glsi13g0580 1081 NCBIfam calcium-translocating P-type ATPase, PMCA-type 131 1053 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi13g0580 1081 MobiDBLite consensus disorder prediction 1 38 - -
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 189 246 - -
Glsi13g0580 1081 MobiDBLite consensus disorder prediction 1 18 - -
Glsi13g0580 1081 SFLD Haloacid Dehalogenase 463 841 - -
Glsi13g0580 1081 SMART Cation_ATPase_N_a_2 137 211 IPR004014 -
Glsi13g0580 1081 PANTHER CATION TRANSPORTING ATPASE 84 1054 - -
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 43 99 - -
Glsi13g0580 1081 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1053 IPR023298 -
Glsi13g0580 1081 Gene3D - 478 834 IPR023214 -
Glsi13g0580 1081 Pfam haloacid dehalogenase-like hydrolase 478 803 - -
Glsi13g0580 1081 Pfam Ca2+-ATPase N terminal autoinhibitory domain 33 75 IPR024750 GO:0005516
Glsi13g0580 1081 Gene3D - 491 689 IPR023299 GO:0000166
Glsi13g0580 1081 NCBIfam HAD-IC family P-type ATPase 422 506 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g0580 1081 NCBIfam HAD-IC family P-type ATPase 756 869 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 236 357 - -
Glsi13g0580 1081 Pfam Cation transporting ATPase, C-terminus 874 1051 IPR006068 -
Glsi13g0580 1081 CDD P-type_ATPase_Ca_PMCA-like 165 922 - -
Glsi13g0580 1081 SUPERFAMILY HAD-like 479 894 IPR036412 -
Glsi13g0580 1081 Gene3D - 189 1042 - -
Glsi13g0580 1081 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 686 IPR023299 GO:0000166
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 806 1055 - -
Glsi13g0580 1081 PRINTS Sodium/potassium-transporting ATPase signature 224 244 - -
Glsi13g0580 1081 PRINTS Sodium/potassium-transporting ATPase signature 474 495 - -
Glsi13g0580 1081 PRINTS Sodium/potassium-transporting ATPase signature 600 618 - -
Glsi13g0580 1081 SUPERFAMILY Calcium ATPase, transduction domain A 259 354 IPR008250 -
Glsi13g0580 1081 FunFam Calcium-transporting ATPase 9 plasma membrane-type 335 505 - -
Glsi13g0580 1081 Pfam Cation transporter/ATPase, N-terminus 138 206 IPR004014 -
Glsi13g0580 1081 Pfam E1-E2 ATPase 259 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0580 Glsi-ChrGlsi13 24348469 24374412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0580 2 1060 Primary Pumps ATPases AT5G57110 74.154 0.0 1598