Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0568 ATGGAAGATATTGATGAAGCAGCCAACACAAAGCTAAGTCTTGGACTGAGTATTAATGGAGGGTATGTGCCCTTAAAGAGGAAGCAGATCGAAGAGAACAAGCCTATGCTTCCAGAAGAAGAATTGATGAGTTTGAGGAGAATCGATGAGGGAAATTACCAATACCCAGATCATAAAAGCGGATGCAGAAAGAAACTGAGGCTCACAAAAGAGCAATCTGCCATGCTTGAAGATAGCTTTAAGCTTCATAGTTCTCTTAACCCGGTCCAGAAACAAGCACTTGCTCAGCAATTGAACTTGAATCCTAGACAGGTCGAAGTCTGGTTCCAGAACAGAAGAGCAAGGAGCAAGTTGAAGCAAACCGAGGTAGACTGCGAGATCTTGAAGAAATGCTGTGAAAATCTAATGGACGAGAACCGAAGGTTGAAGAAGGAACTGGAGGAGCTTCGTTTGCTGAAAGCTAGAGAAGCAGCATCGTCGTCATCGCCATTATTTATTCAGCTCTCAAGAATGGCGACGTCGCTGGCCTCGTGCTCGTCGTGTGAGAAGCAATTGAAGAAGGCCATTAATATTGAAGGAAAGAACAATAATATTAATGATGCCATTTCTGAAGTGGTCCGGAACAAGAGCCATATATTACAGAGTAGTGGCATAGAGATTTAG 663 0.4329 MEDIDEAANTKLSLGLSINGGYVPLKRKQIEENKPMLPEEELMSLRRIDEGNYQYPDHKSGCRKKLRLTKEQSAMLEDSFKLHSSLNPVQKQALAQQLNLNPRQVEVWFQNRRARSKLKQTEVDCEILKKCCENLMDENRRLKKELEELRLLKAREAASSSSPLFIQLSRMATSLASCSSCEKQLKKAINIEGKNNNINDAISEVVRNKSHILQSSGIEI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0568 220 SMART HOX_1 61 123 IPR001356 GO:0003677
Glsi13g0568 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 188 - -
Glsi13g0568 220 Pfam Homeodomain 63 117 IPR001356 GO:0003677
Glsi13g0568 220 Coils Coil 125 159 - -
Glsi13g0568 220 Pfam Homeobox associated leucine zipper 119 150 IPR003106 GO:0006355|GO:0043565
Glsi13g0568 220 CDD homeodomain 63 120 IPR001356 GO:0003677
Glsi13g0568 220 Gene3D - 57 124 - -
Glsi13g0568 220 SUPERFAMILY Homeodomain-like 50 120 IPR009057 -
Glsi13g0568 220 SMART halz 119 162 IPR003106 GO:0006355|GO:0043565
Glsi13g0568 220 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Glsi13g0568 220 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0568 Glsi-ChrGlsi13 24261134 24262410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0568 63 183 Homeobox Transcription Factor Family AT4G37790 68.595 3.45e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi13g0568 Homeodomain 1.6e-16 CL0123