Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0565 ATGTATCTTCTATTGTCATTTCTCACCAATCAAGGGATCAGTGATATAAGTTTTATGACTGCAGTGGGATCTCCTTCATCCTCTGAAGAGATTGAGGCATCTTCATCCCCGCAAAATTCCCAAGCATTGTTCTTTTTCCTTGGAGGGATAGTAGTGCTAATCATATTGCTGATTCTTGTGTTTGTGTTTCGGAAGCATATTAAACCCACAAAACTGATGAAAATGATAACTCCAAATAAACCGCCGCCAGCTGAGGTGATGGAGATAATAGTTCCATCTAAACAGCAGCCTGGGTCCATGGAGCTCTTTAGTGGGAACCTTCGGACAATTAGTTACTTTGACTTCCATACATTGAAGAAGGCAACCATGAATTTTCATTCTAGTAAATTTCTCGGAAGTGGTGGATTTGGGCCTGTCTATCGGGGAAAGTTAACAGACGGAAGGCTGATTGCTGTTAAGAAACTGTCTCTTAACAAATCCCAACAAGGAGAAAGAGAATTTCTAGCAGAGGTGAGAATGATTACGAGTATCCAACACAAAAATCTGGTTCGCCTCCTTGGATGCTGCACAGATGGGCCTCAAAGGATACTTGTGTATGAATACATGAAGAACAGAAGTTTGGACCTCTTAGTATATGGAAGCAGTGATCAATTTCTGAATTGGAGCATTAGGTTCCAAATTATTCTAGGTGTAGCACGGGGATTGCAATATTTACATGAGGATTCACACATAAGAATTGTACACCGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAGGATTGGAGACTTTGGGCTAGCTAGATTCTTCCCTGAAGACCAAGATTACCTCAGCACTCAGTTTGCAGGAACATTAGGTTATACAGCTCCTGAATATGCTATTAAAGGAGAATTATCAGAAAAGGCGGACATTTATAGTTTTGGAGTCCTTGTGCTTGAAATCATCAGTTGCAGGAAAAACACTGACCTTACTTTACCTTTAGAAATGCAATATCTTCCAGAATATGCATGGAAGCTGTATGAGAGGTCAAGGTTGATAGATCTTGTAGACCCGAAATTGCAAGAACGTGGATTTGTAGAAAAGGATGTTATGCAAGCAATCCATGTGGCCTTCTTGTGTCTTCAGCCTCATGCAAATTTAAGACCTCCCATGTCAGAGATTGTAGCATTGTTGACATTCAAGATTGAAATGGTTACGACACCAATGAGACCAGCCTTCCTCGATCGAAGGCGTAAAAAGGATGATGAGAACCATTCTTGGGAAGCCATATCCGAGGCTTTTCCGTCGCCGATGGCCAGTGATTCTGCATCCATTGCTAGACCACGAAAGTGA 1347 0.4128 MYLLLSFLTNQGISDISFMTAVGSPSSSEEIEASSSPQNSQALFFFLGGIVVLIILLILVFVFRKHIKPTKLMKMITPNKPPPAEVMEIIVPSKQQPGSMELFSGNLRTISYFDFHTLKKATMNFHSSKFLGSGGFGPVYRGKLTDGRLIAVKKLSLNKSQQGEREFLAEVRMITSIQHKNLVRLLGCCTDGPQRILVYEYMKNRSLDLLVYGSSDQFLNWSIRFQIILGVARGLQYLHEDSHIRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQDYLSTQFAGTLGYTAPEYAIKGELSEKADIYSFGVLVLEIISCRKNTDLTLPLEMQYLPEYAWKLYERSRLIDLVDPKLQERGFVEKDVMQAIHVAFLCLQPHANLRPPMSEIVALLTFKIEMVTTPMRPAFLDRRRKKDDENHSWEAISEAFPSPMASDSASIARPRK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0565 448 MobiDBLite consensus disorder prediction 413 448 - -
Glsi13g0565 448 SMART serkin_6 125 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0565 448 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Glsi13g0565 448 Pfam Protein tyrosine and serine/threonine kinase 128 394 IPR001245 GO:0004672|GO:0006468
Glsi13g0565 448 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 424 - -
Glsi13g0565 448 FunFam Cysteine-rich receptor-like protein kinase 10 90 201 - -
Glsi13g0565 448 Gene3D Phosphorylase Kinase; domain 1 90 201 - -
Glsi13g0565 448 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 202 406 - -
Glsi13g0565 448 Gene3D Transferase(Phosphotransferase) domain 1 202 406 - -
Glsi13g0565 448 ProSiteProfiles Protein kinase domain profile. 125 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0565 448 CDD STKc_IRAK 131 397 - -
Glsi13g0565 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0565 Glsi-ChrGlsi13 24240978 24243856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0565 84 412 Receptor kinase-like Gene Family AT1G56120 45.921 5.31e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi13g0565 PK_Tyr_Ser-Thr 6.5e-46 CL0016