Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0564 ATGACAAACAGGAATATGCTTATTGGTTTTCTCCTAACCAGCTTTGCGGTGGCTGCTTCATCTGCTGGTAACTTCAACGAAAATTTTGAAATAACATGGGGTGATGGGCGTGCCAAAATACTAGACCGTGGACAGTTTCTCACTCTATCCCTTGACAAAGGTTCTGGCTCTGGCTTTAGGTCCAAAAATGAGTATCTGTTTGGAAAGATTGACATGCAGCTCAAACTTGTCCCTGGTAACTCTGCTGGCACTGTAACAGCCTATTATCTATCTTCTCAGGGGTCTAATCATGATGAAATAGACTTTGAATTTCTGGGAAACTTGAGTGGCCAACCTTATACTCTTCATACCAACGTATTTACACAAGGGAAAGGCGAGAGAGAACAGCAATTCCATTTGTGGTTCGACCCCACCAAGGACTTCCACACTTACTCCGTTCTTTGGAATCCTCAAAACATCATATTCTTTGTGGATGGCACACCAATAAGGGAGTTCAAGAATCTAGAATCGAAAGGCATTCCTTTCCCAAAGAACCAAGCGATGGGGATATACTCAAGCCTTTGGGACGCAGAAGATTGGGCCACAAGGGGTGGCCTTGTGAAGACAGACTGGAGCCAAGCCCCATTCACTGCCTCCTACAGAAACTTCAATGCCCAGCAAGCTTGTGTCCGGACTTCTTCTTCCAGTTGCTCCTCAGACCAATCCTGGTTCAAACAGTCACTGGGCGCCACGGGGGAAGCCAGAATCAAATGGGTGCAGAAGAACTACATGATTTACAACTATTGCACCGATTCCAAACGCTTCCCACAAGGCTTCCCTCCTGAATGCTCACTCCCATGA 840 0.4619 MTNRNMLIGFLLTSFAVAASSAGNFNENFEITWGDGRAKILDRGQFLTLSLDKGSGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSQGSNHDEIDFEFLGNLSGQPYTLHTNVFTQGKGEREQQFHLWFDPTKDFHTYSVLWNPQNIIFFVDGTPIREFKNLESKGIPFPKNQAMGIYSSLWDAEDWATRGGLVKTDWSQAPFTASYRNFNAQQACVRTSSSSCSSDQSWFKQSLGATGEARIKWVQKNYMIYNYCTDSKRFPQGFPPECSLP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0564 279 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 232 276 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Glsi13g0564 279 FunFam Xyloglucan endotransglucosylase/hydrolase 12 278 - -
Glsi13g0564 279 PIRSF EndGlu_transf 2 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi13g0564 279 Gene3D - 12 278 - -
Glsi13g0564 279 Pfam Glycosyl hydrolases family 16 26 205 IPR000757 GO:0004553|GO:0005975
Glsi13g0564 279 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 18 276 IPR044791 GO:0004553
Glsi13g0564 279 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Glsi13g0564 279 CDD GH16_XET 21 276 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi13g0564 279 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
Glsi13g0564 279 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Glsi13g0564 279 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Glsi13g0564 279 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Glsi13g0564 279 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 278 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0564 Glsi-ChrGlsi13 24230713 24233662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0564 1 276 Glycoside Hydrolase AT4G25810 69.858 5.98e-146 409